Factsheet for PGSC0003DMT400011115

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400016765

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06190.1	PGSC0003DMT400016765	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g080250.2.1	Tomato	plastid	98.53	98.53
VIT_05s0020g02520.t01	Wine grape	plastid	72.48	72.3
PGSC0003DMT400009802	Potato	plastid	70.76	70.59
AT3G06190.1	Thale cress	cytosol	67.57	67.73
CDY05245	Canola	cytosol	65.6	67.42
HORVU2Hr1G023850.1	Barley	cytosol, plastid	64.86	67.35
CDY24708	Canola	cytosol	66.58	67.25
Bra040233.1-P	Field mustard	cytosol	64.13	67.1
GSMUA_Achr6P16160_001	Banana	plastid	68.55	66.91
Bra001186.1-P	Field mustard	cytosol	66.09	66.75
CDY58342	Canola	cytosol	66.09	66.75
Bra020764.1-P	Field mustard	cytosol	62.65	66.23
CDY08064	Canola	cytosol	66.09	66.09
GSMUA_Achr6P23740_001	Banana	plastid	67.08	65.62
Bra006489.1-P	Field mustard	cytosol	64.37	65.01
CDY66705	Canola	cytosol	64.37	65.01
Zm00001d022366_P001	Maize	plastid	65.85	63.51
TraesCS2B01G159700.1	Wheat	mitochondrion, plastid	66.09	63.29
Zm00001d007068_P001	Maize	plastid	66.09	63.15
TraesCS2A01G135800.1	Wheat	mitochondrion, plastid	65.85	63.06
TraesCS2D01G138300.1	Wheat	mitochondrion, plastid	65.85	63.06
Bra002200.1-P	Field mustard	cytosol	61.67	62.75
EER99824	Sorghum	plastid	65.6	62.68
Os07t0655300-01	Rice	plastid	65.85	61.75
CDY18844	Canola	cytosol	64.13	60.84
CDX70860	Canola	cytosol	64.62	59.77
AT5G19000.2	Thale cress	plastid	64.62	59.5
CDX92567	Canola	cytosol	62.41	57.86
CDY02591	Canola	cytosol	56.51	57.5
CDY13941	Canola	cytosol	61.18	56.72
PGSC0003DMT400058456	Potato	cytosol	56.02	56.3
PGSC0003DMT400070468	Potato	cytosol	56.27	56.13
PGSC0003DMT400069942	Potato	cytosol	54.79	54.66

Protein Annotations

Gene3D:1.25.40.420	EntrezGene:102602768	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BPM_C
InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR002083
InterPro:IPR008974	UniProt:M0ZZ22	InterPro:MATH/TRAF_dom	PFAM:PF00651	EnsemblPlantsGene:PGSC0003DMG400004349	PGSC:PGSC0003DMG400004349
EnsemblPlants:PGSC0003DMT400011115	PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR24411	PANTHER:PTHR24411:SF37	InterPro:SKP1/BTB/POZ_sf
SMART:SM00061	SMART:SM00225	SUPFAM:SSF49599	SUPFAM:SSF54695	InterPro:TRAF-like	UniParc:UPI000296B9B7
RefSeq:XP_006339418.1	RefSeq:XP_006339419.1	SEG:seg	:	:	:

Description

Speckle-type POZ protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004349]

Coordinates

chr1:+:61207484..61216952

Molecular Weight (calculated)

45185.1 Da

IEP (calculated)

6.454

GRAVY (calculated)

-0.111

Length

407 amino acids

Sequence
(BLAST)

001: MGTFRVPSEP SKPQNSSSSQ PTTTTSTSRI DTINGSHEFK VDGYALSKGM GIGKYVTSEI FTVGGHSWAV YFYPDGKSSE DNGTYVSLFI ALASDATDVR
101: ALFELSLMDQ SGNERHKVHT HFGRVLETGP YTLKYRGSMW GYKRFFRRAL LETSDYLKDD CLLIQCTVGV VRSYNETPKT FSLPVPPSDI GLHFGMLLES
201: GEGADIKFEV EGEVFAAHKL VLAARSPVLR AQLFGPLKEE NVQSIRVEEI QAPVFKALLH FIYWDALPDL QELVGLDTKW AVALMAQHLL AAADQYGLER
301: LRALCEAKLC EDVTINTVAT TLALADQHHC VQLKSVCLKF IALPENLKAV MQSEGFDHLR ESCPSVITEL LKYVAGMNEH AIISYVHGGH ILDGTDVNGR
401: RVKQRIY

Best Arabidopsis Sequence Match ( AT3G06190.1 )
(BLAST)

001: MDTIRVSKEV PGSSKSTAQS LTESTSRTET INGSHEFKIS GYSLVKGMGI GKYVASDTFM VGGYSWAIYF YPDGKSPEDN SVYVSLFIAL ASEGADVRAL
101: FELTLVDQSG NERHKVHSHF GRTLESGPYT LKYRGSMWGY KRFFKRSLLE SSDYLKDNGL LVRCCVGVVK SRTEGPRCYN IPVPVSGLGQ QFGKLLESGK
201: GADVTFEVDG ETFPAHKLVL AARSAVFRAQ LFGPLRSENT NCIIIEDVQA PIFKMLLHFI YWDEMPDMQD LIGTDLKWAS TLVAQHLLAA ADRYALERLR
301: TICESKLCEG ISINTVATTL ALAEQHHCFQ LKAACLKFIA LPENLKAVME TDGFDYLKES CPSLLSELLE YVARLSEHSL TSSGHRKELF ADGCDLNGRR
401: VKQRLH

Arabidopsis Description

BPM2BTB/POZ and MATH domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.