Factsheet for Bra001186.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra016291.1-P
Bra024680.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06190.1	Bra016291.1-P	AT1G26830.1	15772280
AT3G06190.1	Bra024680.1-P	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58342	Canola	cytosol	100.0	100.0
AT3G06190.1	Thale cress	cytosol	91.07	90.39
Bra020764.1-P	Field mustard	cytosol	85.86	89.87
Bra040233.1-P	Field mustard	cytosol	86.35	89.46
Bra002200.1-P	Field mustard	cytosol	78.91	79.5
Bra006489.1-P	Field mustard	cytosol	78.66	78.66
VIT_05s0020g02520.t01	Wine grape	plastid	74.44	73.53
HORVU2Hr1G023850.1	Barley	cytosol, plastid	67.0	68.88
GSMUA_Achr6P23740_001	Banana	plastid	69.73	67.55
GSMUA_Achr6P16160_001	Banana	plastid	69.73	67.39
Solyc01g080250.2.1	Tomato	plastid	67.25	66.58
PGSC0003DMT400011115	Potato	plastid	66.75	66.09
Zm00001d022366_P001	Maize	plastid	68.98	65.88
EER99824	Sorghum	plastid	68.98	65.26
Zm00001d007068_P001	Maize	plastid	68.73	65.02
Os07t0655300-01	Rice	plastid	69.98	64.98
TraesCS2A01G135800.1	Wheat	mitochondrion, plastid	67.99	64.47
TraesCS2B01G159700.1	Wheat	mitochondrion, plastid	67.99	64.47
TraesCS2D01G138300.1	Wheat	mitochondrion, plastid	67.99	64.47
Bra000147.1-P	Field mustard	cytosol	53.85	56.81
Bra017053.1-P	Field mustard	cytosol	55.58	56.14
Bra006591.1-P	Field mustard	plastid	52.61	51.71
Bra036437.1-P	Field mustard	plastid	56.58	51.12
Bra020142.1-P	Field mustard	plastid	50.87	49.4

Protein Annotations

Gene3D:1.25.40.420	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BPM_C	InterPro:BTB/POZ_dom
EnsemblPlantsGene:Bra001186	EnsemblPlants:Bra001186.1	EnsemblPlants:Bra001186.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974	UniProt:M4CAF7	InterPro:MATH/TRAF_dom	PFAM:PF00651
PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR24411	PANTHER:PTHR24411:SF37	InterPro:SKP1/BTB/POZ_sf	SMART:SM00061
SMART:SM00225	SUPFAM:SSF49599	SUPFAM:SSF54695	InterPro:TRAF-like	UniParc:UPI0002540AAB	SEG:seg

Description

AT3G06190 (E=1e-195) ATBPM2, BPM2 | BPM2 (BTB-POZ AND MATH DOMAIN 2); protein binding

Coordinates

chrA03:+:15198128..15199942

Molecular Weight (calculated)

45008.8 Da

IEP (calculated)

6.828

GRAVY (calculated)

-0.211

Length

403 amino acids

Sequence
(BLAST)

001: MDATRVCSEV PGSSKSSLTE STSRTETING SHEFKISGYS LAKGMGIGKY VASDTFMVGG YSWAIYFYPD GKSPEDNSVY VSLFIALASE GADVRALFEL
101: TLVDQSGNER HKVHSHFGRT LESGPYTLKY RGSMWGYKRF FKRTLLESSD YLKDNCLLVR CCVGVVKSHT EGPRSYNIPV PVSDLGHQFG KLLESGKGVD
201: VTFQVDGETF PAHTLVLAAR SPVFRAQLFG PLKNQNTKRI EIEDMEAPIF KMFLHFIYWD ELPDMEDIMG TDLKWASTLV AQHLLAAADR YALERLRTIC
301: ESKLCEGISI NTVATTLALA EQHHCFQLKA ACLKFIALPQ NLKAVMETDG FDYLKESCPC LLSELLEYVA RLSEHSLTST GQRKELYADG GDVNGRRVKQ
401: RLH

Best Arabidopsis Sequence Match ( AT3G06190.1 )
(BLAST)

001: MDTIRVSKEV PGSSKSTAQS LTESTSRTET INGSHEFKIS GYSLVKGMGI GKYVASDTFM VGGYSWAIYF YPDGKSPEDN SVYVSLFIAL ASEGADVRAL
101: FELTLVDQSG NERHKVHSHF GRTLESGPYT LKYRGSMWGY KRFFKRSLLE SSDYLKDNGL LVRCCVGVVK SRTEGPRCYN IPVPVSGLGQ QFGKLLESGK
201: GADVTFEVDG ETFPAHKLVL AARSAVFRAQ LFGPLRSENT NCIIIEDVQA PIFKMLLHFI YWDEMPDMQD LIGTDLKWAS TLVAQHLLAA ADRYALERLR
301: TICESKLCEG ISINTVATTL ALAEQHHCFQ LKAACLKFIA LPENLKAVME TDGFDYLKES CPSLLSELLE YVARLSEHSL TSSGHRKELF ADGCDLNGRR
401: VKQRLH

Arabidopsis Description

BPM2BTB/POZ and MATH domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.