Factsheet for HORVU2Hr1G023850.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU6Hr1G075720.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06190.1	HORVU6Hr1G075720.2	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G159700.1	Wheat	mitochondrion, plastid	99.23	91.53
TraesCS2D01G138300.1	Wheat	mitochondrion, plastid	99.23	91.53
TraesCS2A01G135800.1	Wheat	mitochondrion, plastid	98.72	91.06
Zm00001d022366_P001	Maize	plastid	91.07	84.6
EER99824	Sorghum	plastid	91.58	84.27
Zm00001d007068_P001	Maize	plastid	90.56	83.33
Os07t0655300-01	Rice	plastid	91.58	82.72
VIT_07s0104g00570.t01	Wine grape	cytosol	76.02	74.13
GSMUA_Achr6P23740_001	Banana	plastid	77.04	72.6
VIT_05s0020g02520.t01	Wine grape	plastid	75.26	72.3
GSMUA_Achr6P16160_001	Banana	plastid	76.79	72.18
Solyc09g072980.2.1	Tomato	cytosol	74.74	71.12
PGSC0003DMT400009802	Potato	plastid	73.98	71.08
KRG95474	Soybean	plastid	73.47	70.24
KRH31976	Soybean	plastid	73.98	70.22
KRH71465	Soybean	plastid	73.72	70.15
KRH67156	Soybean	plastid	72.7	69.51
Bra040233.1-P	Field mustard	cytosol	66.58	67.1
CDY58342	Canola	cytosol	68.88	67.0
CDY66705	Canola	cytosol	68.88	67.0
Bra001186.1-P	Field mustard	cytosol	68.88	67.0
Bra002200.1-P	Field mustard	cytosol	68.11	66.75
Bra020764.1-P	Field mustard	cytosol	65.31	66.49
CDY08064	Canola	cytosol	68.88	66.34
CDY24708	Canola	cytosol	68.11	66.25
CDY05245	Canola	cytosol	66.84	66.16
Bra006489.1-P	Field mustard	cytosol	67.86	66.0
AT3G06190.1	Thale cress	cytosol	68.11	65.76
Solyc01g080250.2.1	Tomato	plastid	67.35	64.86
PGSC0003DMT400011115	Potato	plastid	67.35	64.86
AT5G19000.2	Thale cress	plastid	70.92	62.9
CDY13941	Canola	cytosol	68.37	61.05
CDY18844	Canola	cytosol	66.58	60.84
CDX70860	Canola	cytosol	68.11	60.68
CDX92567	Canola	cytosol	67.86	60.59
CDY02591	Canola	cytosol	60.71	59.5
HORVU5Hr1G104190.1	Barley	cytosol	56.89	55.2
HORVU2Hr1G055140.1	Barley	cytosol	58.93	50.33
HORVU2Hr1G064920.1	Barley	plastid	55.1	50.23
HORVU1Hr1G020270.1	Barley	mitochondrion, plastid	40.05	44.99
HORVU5Hr1G108760.1	Barley	cytosol	37.5	43.11
HORVU3Hr1G084920.2	Barley	cytosol	27.81	41.13
HORVU5Hr1G009850.1	Barley	cytosol	36.22	40.57
HORVU7Hr1G114550.1	Barley	cytosol, plastid	38.27	40.32
HORVU5Hr1G110530.1	Barley	cytosol	25.51	40.32
HORVU5Hr1G108800.1	Barley	cytosol	34.44	39.59
HORVU0Hr1G010120.1	Barley	plastid	35.46	39.38
HORVU5Hr1G089030.1	Barley	cytosol	35.46	39.15
HORVU2Hr1G112920.1	Barley	cytosol	34.69	38.75
HORVU2Hr1G106560.1	Barley	plastid	34.69	38.1
HORVU7Hr1G074430.1	Barley	cytosol	32.91	36.13
HORVU7Hr1G074420.1	Barley	cytosol	26.53	35.74
HORVU6Hr1G034020.1	Barley	plastid	21.94	33.59
HORVU5Hr1G009860.1	Barley	cytosol, peroxisome	35.71	31.75
HORVU2Hr1G106750.2	Barley	plastid	37.76	31.22
HORVU6Hr1G069480.1	Barley	plastid	35.2	29.05

Protein Annotations

Gene3D:1.25.40.420	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	UniProt:A0A287HDU6	InterPro:BPM_C
InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:HORVU2Hr1G023850	EnsemblPlants:HORVU2Hr1G023850.1
InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	PFAM:PF00651	PFscan:PS50097
PFscan:PS50144	PANTHER:PTHR24411	PANTHER:PTHR24411:SF37	InterPro:SKP1/BTB/POZ_sf	SMART:SM00061	SMART:SM00225
SUPFAM:SSF49599	SUPFAM:SSF54695	InterPro:TRAF-like	UniParc:UPI000B482405	SEG:seg	:

Description

No Description!

Coordinates

chrchr2H:+:72236010..72244213

Molecular Weight (calculated)

43402.1 Da

IEP (calculated)

6.624

GRAVY (calculated)

-0.147

Length

392 amino acids

Sequence
(BLAST)

001: SPSPSPPVET ASTSVTKTVN GSHHFKIAGY SLAKGIGVGK YIASESFTVG GFEWAIYFYP DGKSAEDGAA YVSLFIALAS EGTDVRALFE LTLVDQSGKG
101: QDKVHTHFGR SLEGGPYTLK YRGSMWGYKR FFKRSGLETS DYLKDDCLLV NCTVGVVQSH TEGPKIYRIP VPQSDMSQHI GHLLTSGKRT DIIFEVDEEM
201: FPAHKVILAA RSPVFRAQLF GPMKDKNMKC IKIEDMEAPV FKALLHFMYW DELPNIEELT GLNTTWVSTL MAQHLLAAAD RYALERLKLL SELKLCEDVA
301: INTVANTLAL AEQHHCHQLK TVCLKFVASP ENLKAVMQTE GFDYLQQSCP SLLTELLEYV AKVGDHAVPP CLYSNEVLDG GDANGRRVKP RL

Best Arabidopsis Sequence Match ( AT5G19000.1 )
(BLAST)

001: MGTTRVCSEV SSGSSKSLSQ SLTVSTSTTE TVNGFHEFKI CGYSLAKGVG VGKYVASDTF MVGGYSWAIY FYPDGKSPED NSSYVSLFIA LASEGADVRA
101: LFELTLVDQS GNGKHKVHSH FGRALDSGPY TLKYRGSMWG YKRFFRRSSL ESSDYLKENS LLVRCRVGVV KSVTEGPRYY NIPVPVSNLG QQLGNLLESG
201: KGCDVVFQVD GETFNAHKLV LATRSPVFNA QLFGPLGDRN TKCITIEDME APIFKVLLHF IYWDELPDMQ ELIGTDSTLA STLVAQHLLA AADRYALERL
301: KAICESKLCE GVAINTVATT LALAEQHHCL QLKAVCLKFV ALPENLKAVM QTDGFDYLKE SCPSLLTELL QYVARLSEHS VIVSGHRKEI FADGCDASGR
401: RVKPRLH

Arabidopsis Description

BPM1BPM1 [Source:UniProtKB/TrEMBL;Acc:A0A178UFC0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.