Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G06190.1 | CDY16196 | AT1G26830.1 | 15772280 |
| AT3G06190.1 | CDY45004 | AT1G26830.1 | 15772280 |
| AT3G06190.1 | CDY46437 | AT1G26830.1 | 15772280 |
| AT3G06190.1 | CDY50732 | AT1G26830.1 | 15772280 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58342 | Canola | cytosol | 98.53 | 99.5 |
| CDY05245 | Canola | cytosol | 89.19 | 91.67 |
| AT3G06190.1 | Thale cress | cytosol | 90.66 | 90.89 |
| CDY24708 | Canola | cytosol | 89.93 | 90.82 |
| CDY18844 | Canola | cytosol | 86.24 | 81.82 |
| CDY66705 | Canola | cytosol | 78.13 | 78.91 |
| VIT_05s0020g02520.t01 | Wine grape | plastid | 73.71 | 73.53 |
| CDX70860 | Canola | cytosol | 78.62 | 72.73 |
| CDX92567 | Canola | cytosol | 77.4 | 71.75 |
| CDY13941 | Canola | cytosol | 77.15 | 71.53 |
| CDY02591 | Canola | cytosol | 68.8 | 70.0 |
| HORVU2Hr1G023850.1 | Barley | cytosol, plastid | 66.34 | 68.88 |
| GSMUA_Achr6P23740_001 | Banana | plastid | 69.04 | 67.55 |
| GSMUA_Achr6P16160_001 | Banana | plastid | 69.04 | 67.39 |
| Solyc01g080250.2.1 | Tomato | plastid | 66.58 | 66.58 |
| Zm00001d022366_P001 | Maize | plastid | 68.55 | 66.11 |
| PGSC0003DMT400011115 | Potato | plastid | 66.09 | 66.09 |
| EER99824 | Sorghum | plastid | 68.55 | 65.49 |
| Zm00001d007068_P001 | Maize | plastid | 68.3 | 65.26 |
| Os07t0655300-01 | Rice | plastid | 69.29 | 64.98 |
| TraesCS2D01G138300.1 | Wheat | mitochondrion, plastid | 67.32 | 64.47 |
| TraesCS2B01G159700.1 | Wheat | mitochondrion, plastid | 67.32 | 64.47 |
| TraesCS2A01G135800.1 | Wheat | mitochondrion, plastid | 67.32 | 64.47 |
| CDX93238 | Canola | cytosol | 55.28 | 56.82 |
| CDY07031 | Canola | cytosol | 54.79 | 55.89 |
| CDY07638 | Canola | cytosol | 54.55 | 55.5 |
| CDY61778 | Canola | cytosol | 55.04 | 53.08 |
| CDX70957 | Canola | plastid | 52.33 | 51.95 |
| CDX88828 | Canola | plastid | 52.09 | 51.71 |
| CDY29955 | Canola | plastid | 55.77 | 50.56 |
| CDY09093 | Canola | cytosol, plastid | 45.21 | 50.14 |
| CDY71585 | Canola | cytosol | 21.38 | 43.07 |
| CDY16586 | Canola | cytosol | 17.44 | 40.8 |
| CDY67137 | Canola | endoplasmic reticulum | 35.38 | 40.45 |
| CDX93236 | Canola | cytosol | 36.85 | 36.76 |
Protein Annotations
| Gene3D:1.25.40.420 | Gene3D:2.60.210.10 | Gene3D:3.30.710.10 | MapMan:35.1 | UniProt:A0A078F4Y1 | InterPro:BPM_C |
| InterPro:BTB/POZ_dom | EnsemblPlants:CDY08064 | ProteinID:CDY08064 | ProteinID:CDY08064.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00125322001 | InterPro:IPR000210 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom |
| PFAM:PF00651 | PFscan:PS50097 | PFscan:PS50144 | PANTHER:PTHR24411 | PANTHER:PTHR24411:SF37 | InterPro:SKP1/BTB/POZ_sf |
| SMART:SM00061 | SMART:SM00225 | SUPFAM:SSF49599 | SUPFAM:SSF54695 | InterPro:TRAF-like | UniParc:UPI0004EF36A1 |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g34590DBnaC03g34590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F4Y1]
Coordinates
chrLK031982:-:958881..961210
Molecular Weight (calculated)
45397.2 Da
IEP (calculated)
6.828
GRAVY (calculated)
-0.203
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MDATRVCSEV PGSSKSTVTT SLTESTSRTE TINGSHEFKI SGYSLAKGMG IGKYVASDTF MVGGYSWAIY FYPDGKSPED NSVYVSLFIA LASEGADVRA
101: LFELTLVDQS GNERHKVHSH FGRTLESGPY TLKYRGSMWG YKRFFKRTLL ESSDYLKDNC LLVRCCVGVV KSHTEGPRSY NIPVPVSDLG HQFGKLLESG
201: KGVDVTFQVD GETFPAHTLV LAARSPVFRA QLFGPLKNQN TKRIDIEDME APIFKMFLHF IYWDELPDME DIMGTDLKWA STLVAQHLLA AADRYALERL
301: RTICESKLCE GISINTVATT LALAEQHHCF QLKAACLKFI ALPQNLKAVM ETDGFDYLKE SCPCLLSELL EYVARLSEHS LTSTGQRKEL YADGGDVNGR
401: RVKQRLH
101: LFELTLVDQS GNERHKVHSH FGRTLESGPY TLKYRGSMWG YKRFFKRTLL ESSDYLKDNC LLVRCCVGVV KSHTEGPRSY NIPVPVSDLG HQFGKLLESG
201: KGVDVTFQVD GETFPAHTLV LAARSPVFRA QLFGPLKNQN TKRIDIEDME APIFKMFLHF IYWDELPDME DIMGTDLKWA STLVAQHLLA AADRYALERL
301: RTICESKLCE GISINTVATT LALAEQHHCF QLKAACLKFI ALPQNLKAVM ETDGFDYLKE SCPCLLSELL EYVARLSEHS LTSTGQRKEL YADGGDVNGR
401: RVKQRLH
001: MDTIRVSKEV PGSSKSTAQS LTESTSRTET INGSHEFKIS GYSLVKGMGI GKYVASDTFM VGGYSWAIYF YPDGKSPEDN SVYVSLFIAL ASEGADVRAL
101: FELTLVDQSG NERHKVHSHF GRTLESGPYT LKYRGSMWGY KRFFKRSLLE SSDYLKDNGL LVRCCVGVVK SRTEGPRCYN IPVPVSGLGQ QFGKLLESGK
201: GADVTFEVDG ETFPAHKLVL AARSAVFRAQ LFGPLRSENT NCIIIEDVQA PIFKMLLHFI YWDEMPDMQD LIGTDLKWAS TLVAQHLLAA ADRYALERLR
301: TICESKLCEG ISINTVATTL ALAEQHHCFQ LKAACLKFIA LPENLKAVME TDGFDYLKES CPSLLSELLE YVARLSEHSL TSSGHRKELF ADGCDLNGRR
401: VKQRLH
101: FELTLVDQSG NERHKVHSHF GRTLESGPYT LKYRGSMWGY KRFFKRSLLE SSDYLKDNGL LVRCCVGVVK SRTEGPRCYN IPVPVSGLGQ QFGKLLESGK
201: GADVTFEVDG ETFPAHKLVL AARSAVFRAQ LFGPLRSENT NCIIIEDVQA PIFKMLLHFI YWDEMPDMQD LIGTDLKWAS TLVAQHLLAA ADRYALERLR
301: TICESKLCEG ISINTVATTL ALAEQHHCFQ LKAACLKFIA LPENLKAVME TDGFDYLKES CPSLLSELLE YVARLSEHSL TSSGHRKELF ADGCDLNGRR
401: VKQRLH
Arabidopsis Description
BPM2BTB/POZ and MATH domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8J9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.