Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000147.1-P | Field mustard | cytosol | 95.0 | 99.48 |
| CDY61778 | Canola | cytosol | 97.75 | 92.65 |
| CDX93238 | Canola | cytosol | 84.25 | 85.1 |
| CDY07031 | Canola | cytosol | 84.25 | 84.46 |
| AT2G39760.1 | Thale cress | cytosol | 82.0 | 80.39 |
| VIT_13s0019g02260.t01 | Wine grape | cytosol | 66.0 | 65.02 |
| Solyc05g052960.2.1 | Tomato | cytosol | 64.25 | 62.99 |
| PGSC0003DMT400069942 | Potato | cytosol | 64.25 | 62.99 |
| GSMUA_Achr7P10650_001 | Banana | cytosol | 63.75 | 62.96 |
| GSMUA_Achr10P... | Banana | cytosol | 29.75 | 62.96 |
| KRH31032 | Soybean | nucleus | 64.5 | 62.17 |
| KRG97837 | Soybean | cytosol | 64.25 | 62.08 |
| TraesCS2A01G255800.1 | Wheat | cytosol | 57.25 | 57.83 |
| TraesCS2D01G266900.1 | Wheat | cytosol | 57.25 | 57.83 |
| Os07t0101400-01 | Rice | cytosol | 57.0 | 57.72 |
| EER97813 | Sorghum | plastid | 57.0 | 56.72 |
| CDY58342 | Canola | cytosol | 55.5 | 55.09 |
| CDY08064 | Canola | cytosol | 55.5 | 54.55 |
| CDY66705 | Canola | cytosol | 54.5 | 54.09 |
| CDY05245 | Canola | cytosol | 53.25 | 53.79 |
| CDY24708 | Canola | cytosol | 53.75 | 53.35 |
| HORVU2Hr1G064920.1 | Barley | plastid | 56.5 | 52.56 |
| Zm00001d007888_P002 | Maize | plastid | 54.0 | 50.23 |
| CDY18844 | Canola | cytosol | 53.0 | 49.42 |
| CDX70860 | Canola | cytosol | 54.25 | 49.32 |
| CDX93236 | Canola | cytosol | 50.25 | 49.26 |
| CDY09093 | Canola | cytosol, plastid | 44.5 | 48.5 |
| CDX92567 | Canola | cytosol | 53.0 | 48.29 |
| CDX88828 | Canola | plastid | 49.0 | 47.8 |
| CDX70957 | Canola | plastid | 49.0 | 47.8 |
| CDY02591 | Canola | cytosol | 47.75 | 47.75 |
| CDY13941 | Canola | cytosol | 52.25 | 47.61 |
| CDY29955 | Canola | plastid | 53.0 | 47.22 |
| CDY71585 | Canola | cytosol | 19.75 | 39.11 |
| CDY67137 | Canola | endoplasmic reticulum | 32.5 | 36.52 |
| CDY16586 | Canola | cytosol | 15.0 | 34.48 |
Protein Annotations
| Gene3D:1.25.40.420 | Gene3D:2.60.210.10 | Gene3D:3.30.710.10 | MapMan:35.1 | UniProt:A0A078F7K0 | InterPro:BPM_C |
| InterPro:BTB/POZ_dom | EnsemblPlants:CDY07638 | ProteinID:CDY07638 | ProteinID:CDY07638.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00124743001 | InterPro:IPR000210 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom |
| PFAM:PF00651 | PFAM:PF00917 | PFscan:PS50097 | PFscan:PS50144 | PANTHER:PTHR24411 | PANTHER:PTHR24411:SF54 |
| InterPro:SKP1/BTB/POZ_sf | SMART:SM00061 | SMART:SM00225 | SUPFAM:SSF49599 | SUPFAM:SSF54695 | InterPro:TRAF-like |
| UniParc:UPI0004EE6538 | : | : | : | : | : |
Description
BnaA03g18730DBnaA03g18730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F7K0]
Coordinates
chrLK031980:-:233252..236261
Molecular Weight (calculated)
43999.7 Da
IEP (calculated)
6.841
GRAVY (calculated)
-0.096
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTAVADHPN SDSTSTTVME TVNGSHQFTI KGYSLAKGMG PGRYIQSDVF SIAGYDWAIY FYPDGKNPED NSAYVSLFIA LASDSSDIRA LFELTLMDQS
101: GKGRHKVHSH FDRTLEGGPY TLKCKGSMWG YKRFLRRTAL EASDYLKDDS LVINCTVGVV RARLEVPKQF GVVLPSSDMG QGLKDLIDSE VGCDIAFQVG
201: DETYKAHKLI LAARSPVFRA QFYGPIGNNN VERIVIEDIE PSIFKAMLSF IYTDVLPDVH EITGSASASL ITNMIQHLLA AADLYDLGRL KVLCEVFLCE
301: KLNVDNVATT LALAEQHQLS ELKAFCLKFV TSPGNLRAVM KSEGFKHLNQ SCPSMLSELL STVAAGDKIL TSEQASKKRS LCSSVLAYDT NAARQLRRRT
101: GKGRHKVHSH FDRTLEGGPY TLKCKGSMWG YKRFLRRTAL EASDYLKDDS LVINCTVGVV RARLEVPKQF GVVLPSSDMG QGLKDLIDSE VGCDIAFQVG
201: DETYKAHKLI LAARSPVFRA QFYGPIGNNN VERIVIEDIE PSIFKAMLSF IYTDVLPDVH EITGSASASL ITNMIQHLLA AADLYDLGRL KVLCEVFLCE
301: KLNVDNVATT LALAEQHQLS ELKAFCLKFV TSPGNLRAVM KSEGFKHLNQ SCPSMLSELL STVAAGDKIL TSEQASKKRS LCSSVLAYDT NAARQLRRRT
001: MSTVGGIEQL IPDSVSTSFI ETVNGSHQFT IQGYSLAKGM SPGKFIQSDI FSVGGYDWAI YFYPDGKNPE DQSSYISLFI ALASDSNDIR ALFELTLMDQ
101: SGKGKHKVHS HFDRALEGGP YTLKYKGSMW GYKRFFKRSA LETSDYLKDD CLVINCTVGV VRARLEGPKQ YGIVLPLSNM GQGLKDLLDS EVGCDIAFQV
201: GDETYKAHKL ILAARSPVFR AQFFGPIGNN NVDRIVIDDI EPSIFKAMLS FIYTDVLPNV HEITGSTSAS SFTNMIQHLL AAADLYDLAR LKILCEVLLC
301: EKLDVDNVAT TLALAEQHQF LQLKAFCLEF VASPANLGAV MKSEGFKHLK QSCPTLLSEL LNTVAAADKS STSGQSNKKR SASSVLGCDT TNVRQLRRRT
401: RKEVRAVS
101: SGKGKHKVHS HFDRALEGGP YTLKYKGSMW GYKRFFKRSA LETSDYLKDD CLVINCTVGV VRARLEGPKQ YGIVLPLSNM GQGLKDLLDS EVGCDIAFQV
201: GDETYKAHKL ILAARSPVFR AQFFGPIGNN NVDRIVIDDI EPSIFKAMLS FIYTDVLPNV HEITGSTSAS SFTNMIQHLL AAADLYDLAR LKILCEVLLC
301: EKLDVDNVAT TLALAEQHQF LQLKAFCLEF VASPANLGAV MKSEGFKHLK QSCPTLLSEL LNTVAAADKS STSGQSNKKR SASSVLGCDT TNVRQLRRRT
401: RKEVRAVS
Arabidopsis Description
BPM3BTB/POZ and MATH domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O22286]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.