Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60390.1 | CDX77762 | AT5G47370.1 | 21798944 |
| AT3G60390.1 | CDY25971 | AT5G47370.1 | 21798944 |
| AT3G60390.1 | CDY41046 | AT5G47370.1 | 21798944 |
| AT3G60390.1 | CDY64679 | AT5G47370.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41168 | Canola | nucleus | 99.3 | 95.93 |
| Bra007530.1-P | Field mustard | nucleus | 99.3 | 91.0 |
| AT3G60390.1 | Thale cress | nucleus | 89.12 | 80.63 |
| CDX74693 | Canola | nucleus | 69.12 | 66.78 |
| CDY27404 | Canola | nucleus | 72.98 | 65.2 |
| CDY37015 | Canola | nucleus | 72.28 | 64.17 |
| KRH40151 | Soybean | nucleus | 49.47 | 61.57 |
| KRH66562 | Soybean | nucleus | 63.16 | 58.06 |
| PGSC0003DMT400066838 | Potato | nucleus | 58.25 | 57.64 |
| Solyc01g090460.2.1 | Tomato | nucleus | 57.54 | 57.34 |
| KRH01102 | Soybean | nucleus | 58.25 | 57.24 |
| KRH48783 | Soybean | nucleus | 63.16 | 56.78 |
| CDY41046 | Canola | nucleus | 37.19 | 56.08 |
| CDY25971 | Canola | nucleus | 48.42 | 55.2 |
| CDX77762 | Canola | nucleus | 51.58 | 53.65 |
| CDY64679 | Canola | nucleus | 51.93 | 53.62 |
| CDY70444 | Canola | nucleus | 51.58 | 53.45 |
| CDY67061 | Canola | nucleus | 51.58 | 53.45 |
| CDY09626 | Canola | nucleus | 52.28 | 53.02 |
| CDX90473 | Canola | nucleus | 50.18 | 51.25 |
| CDY40379 | Canola | nucleus | 33.33 | 48.47 |
| CDY63827 | Canola | nucleus | 32.63 | 47.45 |
| CDX77824 | Canola | nucleus | 32.28 | 46.0 |
| CDY17676 | Canola | nucleus | 31.58 | 45.69 |
| CDX81016 | Canola | nucleus | 40.7 | 44.62 |
| CDY64220 | Canola | nucleus | 36.14 | 42.74 |
| CDY03710 | Canola | nucleus | 30.18 | 41.95 |
| CDY41083 | Canola | nucleus | 18.95 | 41.86 |
| CDY67919 | Canola | nucleus | 40.7 | 41.13 |
| CDX69330 | Canola | nucleus | 40.35 | 40.78 |
| CDY60301 | Canola | nucleus | 38.25 | 40.37 |
| CDX72758 | Canola | nucleus | 29.47 | 40.19 |
| CDX98948 | Canola | nucleus | 47.37 | 39.82 |
| CDX96287 | Canola | nucleus | 25.26 | 39.78 |
| CDX70076 | Canola | nucleus | 47.37 | 39.71 |
| CDY55775 | Canola | nucleus | 44.21 | 39.13 |
| CDX78884 | Canola | nucleus | 27.37 | 30.95 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078C6M3 | EnsemblPlants:CDX71814 | ProteinID:CDX71814 | ProteinID:CDX71814.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00155536001 |
| InterPro:HD-ZIP_N | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo |
| PFAM:PF00046 | PFAM:PF02183 | PFAM:PF04618 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF514 | SMART:SM00340 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EDB4DE | SEG:seg |
Description
BnaC08g30600D
Coordinates
chrLK031795:+:708197..710312
Molecular Weight (calculated)
31400.3 Da
IEP (calculated)
9.010
GRAVY (calculated)
-0.692
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MGERDDGLGL SLSLSLGLNQ KESTPRLNPT PMASYSSSSH MHMQNSWIQM FQSSERNSDV GSFLRGLDVN RAPSRVVVDV EEDAGVSSPN STVSSVMSGK
101: RNERELAERG SSSLGGGSDD EDGGGNGDDG SRKKLRLSKE QALVLEETFK EHSTLNPKQK MALAKQLNLR TRQVEVWFQN RRARTKLKQT EVDCEYLKRC
201: CENLTEENRR LQKEVSELRA LKLSPQLYMH MKPPTTLTMC PSCERVAVAS SSVAPAPVMS SSSPMGPMSP WAAIPLRQRP AAGSR
101: RNERELAERG SSSLGGGSDD EDGGGNGDDG SRKKLRLSKE QALVLEETFK EHSTLNPKQK MALAKQLNLR TRQVEVWFQN RRARTKLKQT EVDCEYLKRC
201: CENLTEENRR LQKEVSELRA LKLSPQLYMH MKPPTTLTMC PSCERVAVAS SSVAPAPVMS SSSPMGPMSP WAAIPLRQRP AAGSR
001: MSERDDGLGL SLSLSLGFNQ KDPSSRLNPM PLASYASSSH MQHMQQSNYN HPQKIQNTWI NMFQSSERNS DMRSFLRGID VNRAPSTVVV DVEDEGAGVS
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH
Arabidopsis Description
HAT3Homeobox-leucine zipper protein HAT3 [Source:UniProtKB/Swiss-Prot;Acc:P46602]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.