CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX87097
CDX88160
CDY05377
CDY05474
CDY19813

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G70920.1	CDX87097	AT5G25160.1	21245844
AT1G70920.1	CDX88160	AT5G25160.1	21245844
AT1G70920.1	CDY05377	AT5G25160.1	21245844
AT1G70920.1	CDY05474	AT5G25160.1	21245844
AT1G70920.1	CDY19813	AT5G25160.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016174.1-P	Field mustard	nucleus	99.04	99.04
CDX96287	Canola	nucleus	81.34	93.92
AT1G70920.1	Thale cress	nucleus	81.82	83.01
CDY03710	Canola	nucleus	80.86	82.44
GSMUA_Achr4P06480_001	Banana	nucleus	42.58	53.61
CDY63827	Canola	nucleus	49.28	52.55
CDY40379	Canola	nucleus	49.28	52.55
CDX77824	Canola	nucleus	50.24	52.5
CDY17676	Canola	nucleus	49.28	52.28
GSMUA_AchrUn_...	Banana	nucleus	51.67	49.54
CDY41083	Canola	nucleus	30.14	48.84
GSMUA_Achr4P13440_001	Banana	nucleus	51.67	47.58
Zm00001d044081_P001	Maize	nucleus	50.72	47.11
TraesCS3A01G231600.1	Wheat	nucleus	48.8	45.95
TraesCS3D01G221800.1	Wheat	nucleus	48.33	45.5
TraesCS3B01G260800.1	Wheat	nucleus	48.33	45.5
Os01t0643600-00	Rice	nucleus	49.76	45.41
EES03343	Sorghum	nucleus	48.8	44.35
CDY41046	Canola	nucleus	33.01	36.51
CDY25971	Canola	nucleus	37.32	31.2
CDX81016	Canola	nucleus	38.28	30.77
CDY70444	Canola	nucleus	39.71	30.18
CDY67061	Canola	nucleus	39.71	30.18
CDX77762	Canola	nucleus	39.23	29.93
CDY64220	Canola	nucleus	34.45	29.88
CDY64679	Canola	nucleus	39.23	29.71
CDX71814	Canola	nucleus	40.19	29.47
CDY09626	Canola	nucleus	39.23	29.18
CDX90473	Canola	nucleus	38.76	29.03
CDX69330	Canola	nucleus	38.76	28.72
CDY60301	Canola	nucleus	36.84	28.52
CDY41168	Canola	nucleus	40.19	28.47
CDY67919	Canola	nucleus	38.28	28.37
CDX74693	Canola	nucleus	39.71	28.14
CDY27404	Canola	nucleus	40.67	26.65
CDY55775	Canola	nucleus	40.67	26.4
CDY37015	Canola	nucleus	40.19	26.17
CDX98948	Canola	nucleus	41.15	25.37
CDX70076	Canola	nucleus	41.15	25.29
CDX78884	Canola	nucleus	22.97	19.05

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	GO:A0A078CCN4	EnsemblPlants:CDX72758	ProteinID:CDX72758	ProteinID:CDX72758.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00103134001	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF114	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0004EBC3E2	SEG:seg

Description

BnaC06g32060D

Coordinates

chrLK031797:+:49796..51938

Molecular Weight (calculated)

23773.3 Da

IEP (calculated)

9.342

GRAVY (calculated)

-0.692

Length

209 amino acids

Sequence
(BLAST)

001: MAVSPNSSFL ELTISIPSFS PSPSLPSSSD HMVRDLDINQ TPKMEKDREW IMISATPHVN DDDGNSGGRR RKKLRLTKDQ SHILEESFIQ NHTLTHKQKQ
101: ELATFLKLSQ RQVEVWFQNR RARSKLKHTE MECEYLKKLF GSLKEQNRQL QKEVEELRAL KPVSASVLTM CPRCERVTVA ADNGSNAVEE GTALRSQSRM
201: TISSSSTLC

Best Arabidopsis Sequence Match ( AT1G70920.1 )
(BLAST)

001: MALSPNSSSL DLTISIPSFS PSPSLGDHHG MRDFDINQTP KTEEDREWMI GATPHVNEDD SNSGGRRRKK LRLTKEQSHL LEESFIQNHT LTPKQKKDLA
101: TFLKLSQRQV EVWFQNRRAR SKLKHTEMEC EYLKRWFGSL KEQNRRLQIE VEELRALKPS STSALTMCPR CERVTDAVDN DSNAVQEGAV LSSRSRMTIS
201: SSSSLC

Arabidopsis Description

ATHB-XHomeobox-leucine zipper protein ATHB-X [Source:UniProtKB/Swiss-Prot;Acc:Q8GXM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.