Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040335.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY27404 | Canola | nucleus | 96.57 | 97.18 |
| CDX74693 | Canola | nucleus | 69.47 | 75.59 |
| AT2G44910.1 | Thale cress | nucleus | 74.45 | 75.16 |
| CDX71814 | Canola | nucleus | 64.17 | 72.28 |
| CDY41168 | Canola | nucleus | 65.73 | 71.53 |
| KRH40151 | Soybean | nucleus | 41.74 | 58.52 |
| CDY41046 | Canola | nucleus | 32.71 | 55.56 |
| PGSC0003DMT400066838 | Potato | nucleus | 49.53 | 55.21 |
| Solyc01g090460.2.1 | Tomato | nucleus | 48.6 | 54.55 |
| CDY25971 | Canola | nucleus | 42.37 | 54.4 |
| KRH66562 | Soybean | nucleus | 52.02 | 53.87 |
| KRH48783 | Soybean | nucleus | 52.96 | 53.63 |
| CDY70444 | Canola | nucleus | 45.79 | 53.45 |
| CDY67061 | Canola | nucleus | 45.79 | 53.45 |
| KRH01102 | Soybean | nucleus | 48.29 | 53.45 |
| CDX77762 | Canola | nucleus | 45.48 | 53.28 |
| CDY64679 | Canola | nucleus | 45.79 | 53.26 |
| CDY09626 | Canola | nucleus | 45.79 | 52.31 |
| CDX90473 | Canola | nucleus | 45.17 | 51.97 |
| CDY40379 | Canola | nucleus | 29.28 | 47.96 |
| CDY63827 | Canola | nucleus | 28.66 | 46.94 |
| CDX77824 | Canola | nucleus | 28.97 | 46.5 |
| CDY17676 | Canola | nucleus | 28.35 | 46.19 |
| CDX81016 | Canola | nucleus | 36.76 | 45.38 |
| CDY03710 | Canola | nucleus | 28.04 | 43.9 |
| CDY64220 | Canola | nucleus | 32.09 | 42.74 |
| CDY41083 | Canola | nucleus | 16.82 | 41.86 |
| CDY67919 | Canola | nucleus | 36.45 | 41.49 |
| CDX96287 | Canola | nucleus | 23.36 | 41.44 |
| CDX69330 | Canola | nucleus | 36.14 | 41.13 |
| CDY60301 | Canola | nucleus | 34.27 | 40.74 |
| CDX72758 | Canola | nucleus | 26.17 | 40.19 |
| CDX98948 | Canola | nucleus | 42.06 | 39.82 |
| CDY55775 | Canola | nucleus | 39.88 | 39.75 |
| CDX70076 | Canola | nucleus | 42.06 | 39.71 |
| CDX78884 | Canola | nucleus | 23.99 | 30.56 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078HF66 | UniProt:A0A078HF66 | EnsemblPlants:CDY37015 | ProteinID:CDY37015 |
| ProteinID:CDY37015.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00063218001 | InterPro:HD-ZIP_N | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PFAM:PF04618 | ScanProsite:PS00027 | PFscan:PS50071 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF514 | SMART:SM00340 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI000254408A |
| SEG:seg | : | : | : | : | : |
Description
BnaA04g25930DBnaA04g25930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HF66]
Coordinates
chrLK032390:-:9345..11217
Molecular Weight (calculated)
34813.0 Da
IEP (calculated)
8.423
GRAVY (calculated)
-0.641
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MGESEDGLGL SLSLGLSQLK EPSLGLGLNL LPLRTSSSSF SHMHNHNNNH LQKKINHNSW PHQFHSSERN SDVGSLLRGL EVNRTPSATV VINLEEDLAG
101: VSSPNSNISS VSGNKRDLAA ARGDGGGDEN EAERASCSHG GGSDEEEGGN CEGTRKKLRL SKEQALVLED TFKEHSTLNP KQKLALAKQL NLRTRQVEVW
201: FQNRRARTKL KQTEVDCEYL KRCCDTLTEE NRRLHKEVAE LRALKLSPHL YMHMTPPTTL TMCPSCERVS ASSSSSAMAA AAPPSSITSG GGGRIPTVVG
301: RPSPQRPTPC AAISLQSRLA H
101: VSSPNSNISS VSGNKRDLAA ARGDGGGDEN EAERASCSHG GGSDEEEGGN CEGTRKKLRL SKEQALVLED TFKEHSTLNP KQKLALAKQL NLRTRQVEVW
201: FQNRRARTKL KQTEVDCEYL KRCCDTLTEE NRRLHKEVAE LRALKLSPHL YMHMTPPTTL TMCPSCERVS ASSSSSAMAA AAPPSSITSG GGGRIPTVVG
301: RPSPQRPTPC AAISLQSRLA H
001: MGERDDGLGL SLSLGNSQQK EPSLRLNLMP LTTSSSSSSF QHMHNQNNNS HPQKIHNISW THLFQSSGIK RTTAERNSDA GSFLRGFNVN RAQSSVAVVD
101: LEEEAAVVSS PNSAVSSLSG NKRDLAVARG GDENEAERAS CSRGGGSGGS DDEDGGNGDG SRKKLRLSKD QALVLEETFK EHSTLNPKQK LALAKQLNLR
201: ARQVEVWFQN RRARTKLKQT EVDCEYLKRC CDNLTEENRR LQKEVSELRA LKLSPHLYMH MTPPTTLTMC PSCERVSSSA ATVTAAPSTT TTPTVVGRPS
301: PQRLTPWTAI SLQQKSGR
101: LEEEAAVVSS PNSAVSSLSG NKRDLAVARG GDENEAERAS CSRGGGSGGS DDEDGGNGDG SRKKLRLSKD QALVLEETFK EHSTLNPKQK LALAKQLNLR
201: ARQVEVWFQN RRARTKLKQT EVDCEYLKRC CDNLTEENRR LQKEVSELRA LKLSPHLYMH MTPPTTLTMC PSCERVSSSA ATVTAAPSTT TTPTVVGRPS
301: PQRLTPWTAI SLQQKSGR
Arabidopsis Description
ATHB-4Uncharacterized protein At2g44910 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV86]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.