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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 3
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra007952.1-P Field mustard nucleus 99.51 99.51
CDX96287 Canola nucleus 72.68 82.32
CDX72758 Canola nucleus 82.44 80.86
AT1G70920.1 Thale cress nucleus 79.51 79.13
GSMUA_Achr4P06480_001 Banana nucleus 44.88 55.42
CDX77824 Canola nucleus 50.73 52.0
CDY40379 Canola nucleus 49.27 51.53
CDY17676 Canola nucleus 49.27 51.27
GSMUA_AchrUn_... Banana nucleus 54.15 50.92
CDY63827 Canola nucleus 48.29 50.51
TraesCS3A01G231600.1 Wheat nucleus 52.2 48.2
GSMUA_Achr4P13440_001 Banana nucleus 53.17 48.02
Zm00001d044081_P001 Maize nucleus 52.68 48.0
TraesCS3D01G221800.1 Wheat nucleus 51.71 47.75
TraesCS3B01G260800.1 Wheat nucleus 51.71 47.75
Os01t0643600-00 Rice nucleus 53.17 47.6
CDY41083 Canola nucleus 29.76 47.29
EES03343 Sorghum nucleus 51.22 45.65
CDY41046 Canola nucleus 33.66 36.51
CDY25971 Canola nucleus 39.51 32.4
CDY70444 Canola nucleus 42.93 32.0
CDY67061 Canola nucleus 42.93 32.0
CDY64679 Canola nucleus 41.46 30.8
CDX77762 Canola nucleus 40.98 30.66
CDY09626 Canola nucleus 41.46 30.25
CDX71814 Canola nucleus 41.95 30.18
CDX90473 Canola nucleus 40.98 30.11
CDY64220 Canola nucleus 35.12 29.88
CDX74693 Canola nucleus 42.93 29.83
CDX81016 Canola nucleus 37.56 29.62
CDY41168 Canola nucleus 42.44 29.49
CDX69330 Canola nucleus 39.51 28.72
CDY27404 Canola nucleus 44.39 28.53
CDY60301 Canola nucleus 37.56 28.52
CDY67919 Canola nucleus 39.02 28.37
CDY37015 Canola nucleus 43.9 28.04
CDX70076 Canola nucleus 41.46 25.0
CDY55775 Canola nucleus 39.02 24.84
CDX98948 Canola nucleus 40.98 24.78
CDX78884 Canola nucleus 21.95 17.86
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.1GO:A0A078EP22EnsemblPlants:CDY03710ProteinID:CDY03710ProteinID:CDY03710.1
ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488
GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0043565EnsemblPlantsGene:GSBRNA2T00116514001InterPro:Homeobox-like_sfInterPro:Homeobox_CSInterPro:Homeobox_domInterPro:IPR001356
InterPro:Leu_zip_homeoPFAM:PF00046PFAM:PF02183ScanProsite:PS00027PFscan:PS50071PANTHER:PTHR24326
PANTHER:PTHR24326:SF114SMART:SM00340SMART:SM00389SUPFAM:SSF46689UniParc:UPI0004EE6C5ESEG:seg
Description
BnaA02g15270D
Coordinates
chrLK031945:-:694338..696248
Molecular Weight (calculated)
23416.9 Da
IEP (calculated)
9.689
GRAVY (calculated)
-0.710
Length
205 amino acids
Sequence
(BLAST)
001: MALSPNSSSL ELSISLPSFS QLSSHPSSGK HMVRDLDINQ TPKTEDREWI MIAAAPHANE EDSNSFGWRR KKLRLTKEQS HLLEESFIQN HTLTSKQKLE
101: LATFLKLSQR QVEVWFQNRR ARSKLKHTEM ECEYLKRCFG SLKEQNRLLQ KEVEELRALK AVPASILTMC PRCERATDAT DNAVKEGTAP RSQSRRTISS
201: SSSLC
Best Arabidopsis Sequence Match ( AT1G70920.1 )
(BLAST)
001: MALSPNSSSL DLTISIPSFS PSPSLGDHHG MRDFDINQTP KTEEDREWMI GATPHVNEDD SNSGGRRRKK LRLTKEQSHL LEESFIQNHT LTPKQKKDLA
101: TFLKLSQRQV EVWFQNRRAR SKLKHTEMEC EYLKRWFGSL KEQNRRLQIE VEELRALKPS STSALTMCPR CERVTDAVDN DSNAVQEGAV LSSRSRMTIS
201: SSSSLC
Arabidopsis Description
ATHB-XHomeobox-leucine zipper protein ATHB-X [Source:UniProtKB/Swiss-Prot;Acc:Q8GXM7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.