CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71814
CDX77762
CDY04768
CDY21400
CDY25761
CDY25971
CDY41046
CDY41168
CDY64679

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37790.1	CDY04768	AT1G22920.1	21798944
AT4G37790.1	CDY21400	AT1G22920.1	21798944
AT4G37790.1	CDY25761	AT1G22920.1	21798944
AT4G37790.1	CDX71814	AT3G60390.1	21798944
AT4G37790.1	CDY41168	AT3G60390.1	21798944
AT4G37790.1	CDX77762	AT5G47370.1	21798944
AT4G37790.1	CDY25971	AT5G47370.1	21798944
AT4G37790.1	CDY41046	AT5G47370.1	21798944
AT4G37790.1	CDY64679	AT5G47370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011786.1-P	Field mustard	nucleus	95.74	95.74
CDY67919	Canola	nucleus	95.74	95.74
AT4G37790.1	Thale cress	nucleus	86.88	88.13
CDY64220	Canola	nucleus	73.4	85.89
CDY60301	Canola	nucleus	81.21	84.81
PGSC0003DMT400055199	Potato	nucleus	57.09	60.53
Solyc02g091930.2.1	Tomato	nucleus	57.09	60.07
PGSC0003DMT400026968	Potato	nucleus	51.06	56.69
KRH28314	Soybean	nucleus	56.74	56.54
Solyc02g063520.2.1	Tomato	nucleus	50.35	56.35
VIT_00s0732g00010.t01	Wine grape	nucleus	56.38	56.18
KRH77172	Soybean	nucleus	54.96	54.77
KRH04366	Soybean	nucleus	53.9	48.72
CDY41046	Canola	nucleus	31.91	47.62
KRH58171	Soybean	extracellular, nucleus	51.42	47.54
CDX81016	Canola	nucleus	39.72	43.08
CDX77762	Canola	nucleus	40.07	41.24
CDY64679	Canola	nucleus	40.07	40.94
CDY25971	Canola	nucleus	35.82	40.4
CDX71814	Canola	nucleus	40.78	40.35
CDY40379	Canola	nucleus	28.01	40.31
CDY63827	Canola	nucleus	28.01	40.31
CDY09626	Canola	nucleus	39.72	39.86
CDX90473	Canola	nucleus	39.36	39.78
CDY03710	Canola	nucleus	28.72	39.51
CDX77824	Canola	nucleus	28.01	39.5
CDY70444	Canola	nucleus	38.3	39.27
CDY67061	Canola	nucleus	38.3	39.27
CDY41168	Canola	nucleus	40.78	38.98
CDX72758	Canola	nucleus	28.72	38.76
CDY17676	Canola	nucleus	26.95	38.58
CDY55775	Canola	nucleus	43.62	38.2
CDY41083	Canola	nucleus	17.38	37.98
CDX74693	Canola	nucleus	38.3	36.61
CDX96287	Canola	nucleus	23.4	36.46
CDY37015	Canola	nucleus	41.13	36.14
CDY27404	Canola	nucleus	40.78	36.05
CDX98948	Canola	nucleus	43.26	35.99
CDX70076	Canola	nucleus	42.91	35.59
CDX78884	Canola	nucleus	26.6	29.76

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	GO:A0A078BWZ8	EnsemblPlants:CDX69330	ProteinID:CDX69330	ProteinID:CDX69330.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00131169001	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF284	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0004EDB60C	SEG:seg

Description

BnaC01g01230D

Coordinates

chrLK031789:+:4207387..4208811

Molecular Weight (calculated)

31087.7 Da

IEP (calculated)

8.288

GRAVY (calculated)

-0.660

Length

282 amino acids

Sequence
(BLAST)

001: MGLDDSCNTG LVLGLGLSPT PNNYSHTIKK SSTTVELHFD PSLTLSLSGE SYKTKAVEMT DAGAGDQIFR RTSSHSGISS FSSGRIKRER EVFGGDGEEE
101: AEETTERVVS SRVSDDHEDE EGVSARKKLR LTKQQSALLE DSFKVHSTLN PKQKQVLARQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEF LKKCCETLTD
201: ENRRLQKELQ ELKALKMSQP FYMHMPRATL TMCPSCERLS GGGAGGGGGG TVAVDGETGK GAFSIVTKPR FYSHFTNPSA AC

Best Arabidopsis Sequence Match ( AT4G37790.1 )
(BLAST)

001: MGLDDSCNTG LVLGLGLSPT PNNYNHAIKK SSSTVDHRFI RLDPSLTLSL SGESYKIKTG AGAGDQICRQ TSSHSGISSF SSGRVKRERE ISGGDGEEEA
101: EETTERVVCS RVSDDHDDEE GVSARKKLRL TKQQSALLED NFKLHSTLNP KQKQALARQL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KKCCETLTDE
201: NRRLQKELQD LKALKLSQPF YMHMPAATLT MCPSCERLGG GGVGGDTTAV DEETAKGAFS IVTKPRFYNP FTNPSAAC

Arabidopsis Description

HAT22Homeobox-leucine zipper protein HAT22 [Source:UniProtKB/Swiss-Prot;Acc:P46604]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.