Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G70920.1 | CDX87097 | AT5G25160.1 | 21245844 |
| AT1G70920.1 | CDX88160 | AT5G25160.1 | 21245844 |
| AT1G70920.1 | CDY05377 | AT5G25160.1 | 21245844 |
| AT1G70920.1 | CDY05474 | AT5G25160.1 | 21245844 |
| AT1G70920.1 | CDY19813 | AT5G25160.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016174.1-P | Field mustard | nucleus | 93.92 | 81.34 |
| CDX72758 | Canola | nucleus | 93.92 | 81.34 |
| CDY03710 | Canola | nucleus | 82.32 | 72.68 |
| AT1G70920.1 | Thale cress | nucleus | 81.22 | 71.36 |
| CDX77824 | Canola | nucleus | 50.28 | 45.5 |
| CDY40379 | Canola | nucleus | 48.62 | 44.9 |
| CDY17676 | Canola | nucleus | 48.62 | 44.67 |
| GSMUA_Achr4P06480_001 | Banana | nucleus | 40.88 | 44.58 |
| CDY63827 | Canola | nucleus | 48.07 | 44.39 |
| GSMUA_AchrUn_... | Banana | nucleus | 51.38 | 42.66 |
| TraesCS3A01G231600.1 | Wheat | nucleus | 49.72 | 40.54 |
| GSMUA_Achr4P13440_001 | Banana | nucleus | 50.83 | 40.53 |
| TraesCS3D01G221800.1 | Wheat | nucleus | 49.17 | 40.09 |
| TraesCS3B01G260800.1 | Wheat | nucleus | 49.17 | 40.09 |
| Zm00001d044081_P001 | Maize | nucleus | 49.72 | 40.0 |
| Os01t0643600-00 | Rice | nucleus | 49.72 | 39.3 |
| EES03343 | Sorghum | nucleus | 48.07 | 37.83 |
| CDY41083 | Canola | nucleus | 25.97 | 36.43 |
| CDY41046 | Canola | nucleus | 30.94 | 29.63 |
| CDX81016 | Canola | nucleus | 38.12 | 26.54 |
| CDY25971 | Canola | nucleus | 35.36 | 25.6 |
| CDX71814 | Canola | nucleus | 39.78 | 25.26 |
| CDY70444 | Canola | nucleus | 38.12 | 25.09 |
| CDY67061 | Canola | nucleus | 38.12 | 25.09 |
| CDX77762 | Canola | nucleus | 37.57 | 24.82 |
| CDY64679 | Canola | nucleus | 37.57 | 24.64 |
| CDY41168 | Canola | nucleus | 39.78 | 24.41 |
| CDY09626 | Canola | nucleus | 37.57 | 24.2 |
| CDX90473 | Canola | nucleus | 37.02 | 24.01 |
| CDX74693 | Canola | nucleus | 38.67 | 23.73 |
| CDY27404 | Canola | nucleus | 41.44 | 23.51 |
| CDX69330 | Canola | nucleus | 36.46 | 23.4 |
| CDY37015 | Canola | nucleus | 41.44 | 23.36 |
| CDY64220 | Canola | nucleus | 30.94 | 23.24 |
| CDY67919 | Canola | nucleus | 35.91 | 23.05 |
| CDY60301 | Canola | nucleus | 33.7 | 22.59 |
| CDY55775 | Canola | nucleus | 37.57 | 21.12 |
| CDX98948 | Canola | nucleus | 39.23 | 20.94 |
| CDX70076 | Canola | nucleus | 39.23 | 20.88 |
| CDX78884 | Canola | nucleus | 17.68 | 12.7 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.1 | GO:A0A078E5A7 | EnsemblPlants:CDX96287 | ProteinID:CDX96287 | ProteinID:CDX96287.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00102426001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF114 | SMART:SM00340 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EDDB0F | SEG:seg |
Description
BnaA07g28980D
Coordinates
chrLK031894:+:111241..113388
Molecular Weight (calculated)
20446.5 Da
IEP (calculated)
10.085
GRAVY (calculated)
-0.640
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVSPNSSSL ELTISIPSFS PSPSLPSSGN HMVRDLDINQ TPKTKNDREW IMIGATPHSY KKNHTLTHKQ KQELATFLKL SQRQVEVWFQ NRRARSKLKH
101: TEMECEYLKR LFGSLKEQNR QLQKEVEELR ALKPVSASVL TMCPRCERVT VAADNGSNAV EEGTALRSQS RMTISSSSTL C
101: TEMECEYLKR LFGSLKEQNR QLQKEVEELR ALKPVSASVL TMCPRCERVT VAADNGSNAV EEGTALRSQS RMTISSSSTL C
001: MALSPNSSSL DLTISIPSFS PSPSLGDHHG MRDFDINQTP KTEEDREWMI GATPHVNEDD SNSGGRRRKK LRLTKEQSHL LEESFIQNHT LTPKQKKDLA
101: TFLKLSQRQV EVWFQNRRAR SKLKHTEMEC EYLKRWFGSL KEQNRRLQIE VEELRALKPS STSALTMCPR CERVTDAVDN DSNAVQEGAV LSSRSRMTIS
201: SSSSLC
101: TFLKLSQRQV EVWFQNRRAR SKLKHTEMEC EYLKRWFGSL KEQNRRLQIE VEELRALKPS STSALTMCPR CERVTDAVDN DSNAVQEGAV LSSRSRMTIS
201: SSSSLC
Arabidopsis Description
ATHB-XHomeobox-leucine zipper protein ATHB-X [Source:UniProtKB/Swiss-Prot;Acc:Q8GXM7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.