Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0182300-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G70920.1 | Os02t0182300-00 | AT5G25160.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G221800.1 | Wheat | nucleus | 87.34 | 90.09 |
| TraesCS3B01G260800.1 | Wheat | nucleus | 87.34 | 90.09 |
| TraesCS3A01G231600.1 | Wheat | nucleus | 86.9 | 89.64 |
| Zm00001d044081_P001 | Maize | nucleus | 87.77 | 89.33 |
| EES03343 | Sorghum | nucleus | 87.34 | 86.96 |
| GSMUA_Achr4P06480_001 | Banana | nucleus | 57.21 | 78.92 |
| GSMUA_AchrUn_... | Banana | nucleus | 73.8 | 77.52 |
| Os09t0447000-00 | Rice | nucleus | 29.26 | 74.44 |
| GSMUA_Achr4P13440_001 | Banana | nucleus | 71.62 | 72.25 |
| Bra026666.1-P | Field mustard | nucleus | 45.41 | 66.67 |
| VIT_01s0011g04870.t01 | Wine grape | nucleus | 63.32 | 64.44 |
| KRH50371 | Soybean | nucleus | 58.95 | 63.38 |
| KRG89300 | Soybean | nucleus | 58.95 | 61.64 |
| CDY40379 | Canola | nucleus | 52.4 | 61.22 |
| CDX77824 | Canola | nucleus | 52.84 | 60.5 |
| Bra024888.1-P | Field mustard | nucleus | 51.97 | 60.41 |
| CDY63827 | Canola | nucleus | 51.53 | 60.2 |
| Bra017451.1-P | Field mustard | nucleus | 41.92 | 60.0 |
| CDY17676 | Canola | nucleus | 51.53 | 59.9 |
| Solyc05g008050.1.1 | Tomato | nucleus | 54.59 | 59.81 |
| PGSC0003DMT400078329 | Potato | nucleus | 55.02 | 58.6 |
| CDY03710 | Canola | nucleus | 47.6 | 53.17 |
| Bra007952.1-P | Field mustard | nucleus | 47.6 | 53.17 |
| AT1G70920.1 | Thale cress | nucleus | 47.6 | 52.91 |
| Bra016174.1-P | Field mustard | nucleus | 46.29 | 50.72 |
| CDY41083 | Canola | nucleus | 28.38 | 50.39 |
| CDX72758 | Canola | nucleus | 45.41 | 49.76 |
| CDX96287 | Canola | nucleus | 39.3 | 49.72 |
| AT2G01430.1 | Thale cress | plasma membrane | 52.84 | 44.0 |
| Os04t0548700-01 | Rice | nucleus | 38.43 | 35.63 |
| Os03t0231150-00 | Rice | cytosol, extracellular | 16.16 | 34.58 |
| Os06t0140400-01 | Rice | nucleus | 37.12 | 33.2 |
| Os06t0698200-00 | Rice | nucleus | 34.5 | 30.86 |
| Os10t0561800-01 | Rice | nucleus | 38.43 | 28.3 |
| Os06t0140700-01 | Rice | nucleus | 37.99 | 28.25 |
| Os02t0149900-00 | Rice | nucleus | 29.26 | 27.02 |
| Os02t0565600-01 | Rice | extracellular, nucleus | 39.3 | 25.79 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | EntrezGene:4326566 | ProteinID:BAF05607.1 | ProteinID:BAS73383.1 | ncoils:Coil |
| ProteinID:EAZ12873.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo | EnsemblPlantsGene:Os01g0643600 |
| EnsemblPlants:Os01t0643600-00 | PFAM:PF00046 | PFAM:PF02183 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF114 | UniProt:Q0JKX1 | SMART:SM00340 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI00000A1268 |
| RefSeq:XP_015645561.1 | SEG:seg | : | : | : | : |
Description
HOMEOBOX GENE 3Homeodomain-related domain containing protein. (Os01t0643600-00)
Coordinates
chr1:-:25880204..25883718
Molecular Weight (calculated)
25124.0 Da
IEP (calculated)
8.866
GRAVY (calculated)
-0.715
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MMGATSPSGL ELTMAVPGLS SSGSEGAGCN NNNAGGGCNM RDLDINQPAS GGEEEEFPMG SVEEDEEERG VGGPHRPKKL RLSKEQSRLL EESFRLNHTL
101: TPKQKEALAI KLKLRPRQVE VWFQNRRART KLKQTEMECE YLKRCFGSLT EENRRLQREV EELRAMRVAP PTVLSPHTRQ PLPASALTMC PRCERITAAT
201: GPPAVRPPPS SAAAAAPSPF HPRRPSAAF
101: TPKQKEALAI KLKLRPRQVE VWFQNRRART KLKQTEMECE YLKRCFGSLT EENRRLQREV EELRAMRVAP PTVLSPHTRQ PLPASALTMC PRCERITAAT
201: GPPAVRPPPS SAAAAAPSPF HPRRPSAAF
001: MIKLLFTYIC TYTYKLYALY HMDYACVCMY KYKGIVTLQV CLFYIKLRVF LSNFTFSSSI LALKNPNNSL IKIMAILPEN SSNLDLTISV PGFSSSPLSD
101: EGSGGGRDQL RLDMNRLPSS EDGDDEEFSH DDGSAPPRKK LRLTREQSRL LEDSFRQNHT LNPKQKEVLA KHLMLRPRQI EVWFQNRRAR SKLKQTEMEC
201: EYLKRWFGSL TEENHRLHRE VEELRAMKVG PTTVNSASSL TMCPRCERVT PAASPSRAVV PVPAKKTFPP QERDR
101: EGSGGGRDQL RLDMNRLPSS EDGDDEEFSH DDGSAPPRKK LRLTREQSRL LEDSFRQNHT LNPKQKEVLA KHLMLRPRQI EVWFQNRRAR SKLKQTEMEC
201: EYLKRWFGSL TEENHRLHRE VEELRAMKVG PTTVNSASSL TMCPRCERVT PAASPSRAVV PVPAKKTFPP QERDR
Arabidopsis Description
ATHB-17Homeobox-leucine zipper protein ATHB-17 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9N6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.