Factsheet for Os06t0140400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0447000-00	Rice	nucleus	27.34	77.78
Zm00001d045400_P001	Maize	nucleus	69.92	65.81
Zm00001d036118_P001	Maize	nucleus	66.02	64.75
EER87812	Sorghum	nucleus	68.75	61.75
TraesCS7A01G083800.1	Wheat	nucleus	58.2	56.02
TraesCS4A01G382200.1	Wheat	nucleus	57.42	55.26
TraesCS7D01G079000.1	Wheat	nucleus	57.03	54.28
Os06t0140700-01	Rice	nucleus	52.34	43.51
Os04t0548700-01	Rice	nucleus	37.11	38.46
Os01t0643600-00	Rice	nucleus	33.2	37.12
Os10t0561800-01	Rice	nucleus	42.58	35.05
Os03t0231150-00	Rice	cytosol, extracellular	14.45	34.58
Os02t0565600-01	Rice	extracellular, nucleus	43.36	31.81
Os02t0149900-00	Rice	nucleus	30.08	31.05
Os06t0698200-00	Rice	nucleus	28.12	28.12

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EntrezGene:4340069	EMBL:AK059116	EMBL:AY554033	UniProt:B7E3F1
ProteinID:BAD68680.1	ProteinID:BAF18666.1	ProteinID:BAS96076.1	EMBL:CM000143	ncoils:Coil	ProteinID:EEE65058.1
EMBL:EU847516	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	EnsemblPlantsGene:Os06g0140400
EnsemblPlants:Os06t0140400-01	PFAM:PF00046	PFAM:PF02183	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF233	UniProt:Q5VPE5	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	SignalP:SignalP-noTM
UniParc:UPI0000457F43	RefSeq:XP_015642539.1	SEG:seg	:	:	:

Description

HOMEOBOX GENE 28Similar to HAHB-6 (Fragment). (Os06t0140400-01);Similar to HAHB-6 (Fragment). (Os06t0140400-02)

Coordinates

chr6:+:2123412..2124781

Molecular Weight (calculated)

27018.1 Da

IEP (calculated)

9.031

GRAVY (calculated)

-0.358

Length

256 amino acids

Sequence
(BLAST)

001: MERQGLDLGL SLGLGLTTAA TWPAAGFCLN SGMAEQEVIR RDDVVAATAA EDERFACSPG SPVSSGSGKR GSGSGSGDEV DDAGCDVGGG GARKKLRLSK
101: DQAAVLEECF KTHHTLTPKQ KVALAKSLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEHLKR WCDQLADDNR RLHKELAELR ALKATPTPPA AAPPLTTLTM
201: CLSCKRVANA GVPSPAAAIF PGHPQFLCGF RDHAGAASSS YGGASSGLAK AVRAAR

Best Arabidopsis Sequence Match ( AT3G60390.1 )
(BLAST)

001: MSERDDGLGL SLSLSLGFNQ KDPSSRLNPM PLASYASSSH MQHMQQSNYN HPQKIQNTWI NMFQSSERNS DMRSFLRGID VNRAPSTVVV DVEDEGAGVS
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH

Arabidopsis Description

HAT3Homeobox-leucine zipper protein HAT3 [Source:UniProtKB/Swiss-Prot;Acc:P46602]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.