Factsheet for Zm00001d045400_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER87812	Sorghum	nucleus	91.18	87.02
Zm00001d036118_P001	Maize	nucleus	82.35	85.82
Os06t0140400-01	Rice	nucleus	65.81	69.92
TraesCS7A01G083800.1	Wheat	nucleus	58.82	60.15
TraesCS4A01G382200.1	Wheat	nucleus	58.46	59.77
TraesCS7D01G079000.1	Wheat	nucleus	58.82	59.48
Zm00001d002754_P001	Maize	nucleus	38.24	45.81
Zm00001d045398_P001	Maize	nucleus	48.9	45.39
Zm00001d038941_P001	Maize	nucleus	11.03	38.46
Zm00001d044081_P001	Maize	nucleus	31.62	38.22
Zm00001d030191_P001	Maize	nucleus	36.4	37.79
Zm00001d028304_P001	Maize	nucleus	38.6	35.96
Zm00001d005875_P001	Maize	nucleus	41.91	35.08
Zm00001d020670_P001	Maize	nucleus	41.91	34.23
Zm00001d050834_P001	Maize	nucleus	41.54	34.14
Zm00001d047995_P001	Maize	nucleus	37.13	34.12
Zm00001d029934_P001	Maize	nucleus	40.07	33.96
Zm00001d014628_P001	Maize	nucleus	27.21	33.48
Zm00001d014630_P001	Maize	nucleus	29.04	31.98
Zm00001d014629_P001	Maize	nucleus	26.47	30.77
Zm00001d036510_P001	Maize	nucleus	25.74	27.56
Zm00001d000303_P001	Maize	nucleus	26.1	26.39
Zm00001d031745_P001	Maize	plastid	41.91	25.73
Zm00001d009802_P001	Maize	nucleus, plastid	13.97	21.59
Zm00001d007525_P001	Maize	plasma membrane	19.12	18.84

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ProteinID:AQL02228.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	UniProt:K7VB56	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF233	SMART:SM00340	SMART:SM00389
SUPFAM:SSF46689	UniParc:UPI0002221485	EnsemblPlantsGene:Zm00001d045400	EnsemblPlants:Zm00001d045400_P001	EnsemblPlants:Zm00001d045400_T001	SEG:seg

Description

Homeobox-transcription factor 4Putative homeobox DNA-binding and leucine zipper domain family protein

Coordinates

chr9:-:20678179..20679403

Molecular Weight (calculated)

28028.0 Da

IEP (calculated)

9.715

GRAVY (calculated)

-0.318

Length

272 amino acids

Sequence
(BLAST)

001: MAPQSLDLGL SLGLGVAAFQ PSSFCHPGNA VVVPAAAERE ASPAAAEERE RRCSPAGSPV SSGSGSGNKR GAAERSAGAG AGSGDEDDDG AARKKLRLSK
101: DQAAVLEECF KTHHTLTPKQ KVALASSLGL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR WCEQLAEENR RLGKEVAELR ALSAAPAAPL TTLTMCLSCR
201: RVASSSPPSS SSSPNIPGAA AASGGSMASP AAAAATLPAH RQFFCGFRDA GAAAAAYGTA SSGLAKPVRA AR

Best Arabidopsis Sequence Match ( AT3G60390.1 )
(BLAST)

001: MSERDDGLGL SLSLSLGFNQ KDPSSRLNPM PLASYASSSH MQHMQQSNYN HPQKIQNTWI NMFQSSERNS DMRSFLRGID VNRAPSTVVV DVEDEGAGVS
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH

Arabidopsis Description

HAT3Homeobox-leucine zipper protein HAT3 [Source:UniProtKB/Swiss-Prot;Acc:P46602]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.