Factsheet for Zm00001d002754_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d002754_P001
Zm00001d005875_P001
Zm00001d006165_P001
Zm00001d017649_P001
Zm00001d020670_P001
Zm00001d029934_P001
Zm00001d029988_P001
Zm00001d031725_P001
Zm00001d031745_P001
Zm00001d047069_P001
Zm00001d051484_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16780.1	Zm00001d002027_P002	AT1G22920.1	21798944
AT4G16780.1	Zm00001d002027_P002	AT1G71230.1	21798944
AT4G16780.1	Zm00001d002754_P001	AT4G16780.1	21798944
AT4G16780.1	Zm00001d029934_P001	AT4G16780.1	21798944
AT4G16780.1	Zm00001d017649_P001	AT4G17680.1	21798944
AT4G16780.1	Zm00001d029988_P001	AT4G17680.1	21798944
AT4G16780.1	Zm00001d047069_P001	AT4G17680.1	21798944
AT4G16780.1	Zm00001d051484_P001	AT4G17680.1	21798944
AT4G16780.1	Zm00001d005875_P001	AT5G06710.1	21798944
AT4G16780.1	Zm00001d020670_P001	AT5G06710.1	21798944
AT4G16780.1	Zm00001d031745_P001	AT5G06710.1	21798944
AT4G16780.1	Zm00001d006165_P001	AT5G51910.1	21798944
AT4G16780.1	Zm00001d031725_P001	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12613	Sorghum	nucleus	90.31	87.98
TraesCS2A01G415900.1	Wheat	nucleus	81.94	81.94
TraesCS2D01G412900.1	Wheat	nucleus	81.06	80.0
HORVU2Hr1G097940.2	Barley	nucleus	79.3	80.0
TraesCS2B01G434900.1	Wheat	nucleus	80.18	79.13
Os04t0548700-01	Rice	nucleus	82.82	76.11
KRH77331	Soybean	nucleus	55.95	47.39
PGSC0003DMT400067540	Potato	nucleus	55.51	45.82
Solyc08g078300.2.1	Tomato	nucleus	55.51	45.0
Solyc08g007270.2.1	Tomato	nucleus	53.74	44.36
KRH28155	Soybean	nucleus	55.07	43.86
Zm00001d038941_P001	Maize	nucleus	14.98	43.59
PGSC0003DMT400032546	Potato	nucleus	53.3	43.21
KRH57467	Soybean	nucleus	55.95	42.62
GSMUA_Achr4P21600_001	Banana	nucleus	51.98	42.6
KRH04179	Soybean	nucleus	55.07	41.81
VIT_00s0299g00100.t01	Wine grape	nucleus	54.63	41.75
AT4G16780.1	Thale cress	nucleus	51.54	41.2
Bra040094.1-P	Field mustard	nucleus	51.54	41.05
Zm00001d029934_P001	Maize	nucleus	57.71	40.81
Zm00001d044081_P001	Maize	nucleus	39.21	39.56
Zm00001d036118_P001	Maize	nucleus	45.37	39.46
GSMUA_AchrUn_...	Banana	plastid	54.19	39.42
Zm00001d030191_P001	Maize	nucleus	45.37	39.31
Solyc06g060830.2.1	Tomato	nucleus	50.66	38.59
Zm00001d045400_P001	Maize	nucleus	45.81	38.24
PGSC0003DMT400062081	Potato	nucleus	50.66	37.7
GSMUA_Achr1P04360_001	Banana	nucleus	49.34	37.09
Zm00001d028304_P001	Maize	nucleus	46.7	36.3
Zm00001d020670_P001	Maize	nucleus	52.86	36.04
GSMUA_Achr7P06950_001	Banana	nucleus	28.63	35.91
Zm00001d014628_P001	Maize	nucleus	34.8	35.75
Zm00001d045398_P001	Maize	nucleus	44.49	34.47
Zm00001d005875_P001	Maize	nucleus	49.34	34.46
Zm00001d047995_P001	Maize	nucleus	44.49	34.12
Zm00001d014630_P001	Maize	nucleus	36.12	33.2
Zm00001d014629_P001	Maize	nucleus	33.48	32.48
Zm00001d036510_P001	Maize	nucleus	33.04	29.53
Zm00001d050834_P001	Maize	nucleus	42.73	29.31
Zm00001d031745_P001	Maize	plastid	51.54	26.41
Zm00001d000303_P001	Maize	nucleus	31.28	26.39
Zm00001d009802_P001	Maize	nucleus, plastid	19.38	25.0
Zm00001d007525_P001	Maize	plasma membrane	21.59	17.75

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100285975	MapMan:15.5.3.1	UniProt:B6UCL5	ncoils:Coil	EMBL:EU974980
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	EMBL:KJ728362	InterPro:Leu_zip_homeo	ProteinID:ONM15274.1
PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF199	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000182F5CE	EnsemblPlantsGene:Zm00001d002754
EnsemblPlants:Zm00001d002754_P001	EnsemblPlants:Zm00001d002754_T001	SEG:seg	:	:	:

Description

Homeobox-transcription factor 53Homeobox-leucine zipper protein ATHB-4

Coordinates

chr2:+:21690129..21691754

Molecular Weight (calculated)

25050.1 Da

IEP (calculated)

8.920

GRAVY (calculated)

-0.539

Length

227 amino acids

Sequence
(BLAST)

001: MMERVEDLGL SLSLSSSLAS PRTHHVATML LRAPEKRFLE MPLLLPAKRT TEVTGEDGLR GGSDEEDGGC GIDGSRKKLR LSKDQSAVLE DSFREHPTLN
101: PRQKAALAQQ LGLRPRQVEV WFQNRRARTK LKQTEVDCEY LKRCCETLTE ENRRLQKEVQ ELRALKLVSP HLYMHMSPPT TLTMCPSCER VSSSNGNSAA
201: ATAAARARAG AGAGAIVCHP IDRATST

Best Arabidopsis Sequence Match ( AT3G60390.1 )
(BLAST)

001: MSERDDGLGL SLSLSLGFNQ KDPSSRLNPM PLASYASSSH MQHMQQSNYN HPQKIQNTWI NMFQSSERNS DMRSFLRGID VNRAPSTVVV DVEDEGAGVS
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH

Arabidopsis Description

HAT3Homeobox-leucine zipper protein HAT3 [Source:UniProtKB/Swiss-Prot;Acc:P46602]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.