Factsheet for Os04t0548700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0687500-01
Os04t0548700-01
Os04t0654700-02
Os08t0544800-01
Os09t0447000-00
Os09t0521300-00
Os10t0561800-01
Os10t0565500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16780.1	Os04t0654700-02	AT1G22920.1	21798944
AT4G16780.1	Os04t0654700-02	AT1G71230.1	21798944
AT4G16780.1	Os04t0548700-01	AT4G16780.1	21798944
AT4G16780.1	Os10t0561800-01	AT4G16780.1	21798944
AT4G16780.1	Os02t0687500-01	AT4G17680.1	21798944
AT4G16780.1	Os10t0565500-01	AT4G17680.1	21798944
AT4G16780.1	Os09t0447000-00	AT5G06710.1	21798944
AT4G16780.1	Os08t0544800-01	AT5G51910.1	21798944
AT4G16780.1	Os09t0521300-00	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G415900.1	Wheat	nucleus	78.54	85.46
HORVU2Hr1G097940.2	Barley	nucleus	77.33	84.89
TraesCS2D01G412900.1	Wheat	nucleus	78.54	84.35
EES12613	Sorghum	nucleus	78.95	83.69
TraesCS2B01G434900.1	Wheat	nucleus	77.33	83.04
Zm00001d002754_P001	Maize	nucleus	76.11	82.82
Os09t0447000-00	Rice	nucleus	29.96	82.22
KRH77331	Soybean	nucleus	49.8	45.9
PGSC0003DMT400067540	Potato	nucleus	50.2	45.09
Solyc08g007270.2.1	Tomato	nucleus	49.8	44.73
Solyc08g078300.2.1	Tomato	nucleus	50.61	44.64
PGSC0003DMT400032546	Potato	nucleus	49.39	43.57
Os03t0231150-00	Rice	cytosol, extracellular	18.62	42.99
KRH57467	Soybean	nucleus	51.01	42.28
KRH28155	Soybean	nucleus	48.58	42.11
Os10t0561800-01	Rice	nucleus	52.63	41.8
KRH04179	Soybean	nucleus	50.2	41.47
VIT_00s0299g00100.t01	Wine grape	nucleus	48.99	40.74
GSMUA_AchrUn_...	Banana	plastid	51.42	40.71
GSMUA_Achr4P21600_001	Banana	nucleus	45.34	40.43
Bra040094.1-P	Field mustard	nucleus	46.56	40.35
AT4G16780.1	Thale cress	nucleus	46.15	40.14
Solyc06g060830.2.1	Tomato	nucleus	47.77	39.6
Os01t0643600-00	Rice	nucleus	35.63	38.43
PGSC0003DMT400062081	Potato	nucleus	47.37	38.36
Os06t0140400-01	Rice	nucleus	38.46	37.11
GSMUA_Achr1P04360_001	Banana	nucleus	44.13	36.09
Os06t0698200-00	Rice	nucleus	34.82	33.59
GSMUA_Achr7P06950_001	Banana	nucleus	24.29	33.15
Os06t0140700-01	Rice	nucleus	38.46	30.84
Os02t0149900-00	Rice	nucleus	29.15	29.03
Os02t0565600-01	Rice	extracellular, nucleus	39.68	28.08

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EntrezGene:4336580	EMBL:AK122006	ProteinID:BAF15395.1	ProteinID:BAS90360.1
ProteinID:BAT08351.1	ProteinID:CAE05141.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:Leu_zip_homeo	EnsemblPlantsGene:Os04g0548700	EnsemblPlants:Os04t0548700-01	PFAM:PF00046	PFAM:PF02183
PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF199	UniProt:Q0JB92
SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI00001B2064	RefSeq:XP_015634538.1	SEG:seg

Description

HOMEOBOX GENE 17Homeodomain-like containing protein. (Os04t0548700-01)

Coordinates

chr4:-:27478192..27479717

Molecular Weight (calculated)

27292.7 Da

IEP (calculated)

8.935

GRAVY (calculated)

-0.583

Length

247 amino acids

Sequence
(BLAST)

001: MMERAEDLRL SLSLSSPLIA PRTHHVAMLF HAPPEKRFLE MPLLPAAKRS EVVAAEEERA GLRGGGGSDE EDGGCGIDGS RKKLRLSKDQ SAVLEDSFRE
101: HPTLNPRQKA TLAQQLGLRP RQVEVWFQNR RARTKLKQTE VDCEFLKRCC ETLTEENRRL QKEVQELRAL KLVSPHLYMN MSPPTTLTMC PSCERVSNTN
201: NNSSAAAAAD RRGIRTTTAA GGGSVVDTAA DGGILCHRPI AVRPQQS

Best Arabidopsis Sequence Match ( AT3G60390.1 )
(BLAST)

001: MSERDDGLGL SLSLSLGFNQ KDPSSRLNPM PLASYASSSH MQHMQQSNYN HPQKIQNTWI NMFQSSERNS DMRSFLRGID VNRAPSTVVV DVEDEGAGVS
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH

Arabidopsis Description

HAT3Homeobox-leucine zipper protein HAT3 [Source:UniProtKB/Swiss-Prot;Acc:P46602]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.