Factsheet for Os10t0561800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0687500-01
Os04t0548700-01
Os04t0654700-02
Os08t0544800-01
Os09t0447000-00
Os09t0521300-00
Os10t0561800-01
Os10t0565500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16780.1	Os04t0654700-02	AT1G22920.1	21798944
AT4G16780.1	Os04t0654700-02	AT1G71230.1	21798944
AT4G16780.1	Os04t0548700-01	AT4G16780.1	21798944
AT4G16780.1	Os10t0561800-01	AT4G16780.1	21798944
AT4G16780.1	Os02t0687500-01	AT4G17680.1	21798944
AT4G16780.1	Os10t0565500-01	AT4G17680.1	21798944
AT4G16780.1	Os09t0447000-00	AT5G06710.1	21798944
AT4G16780.1	Os08t0544800-01	AT5G51910.1	21798944
AT4G16780.1	Os09t0521300-00	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0447000-00	Rice	nucleus	23.47	81.11
TraesCS1D01G220900.1	Wheat	nucleus	65.59	62.58
TraesCS1B01G232700.2	Wheat	nucleus	65.59	62.39
TraesCS1A01G219200.1	Wheat	nucleus	65.59	62.01
Zm00001d029934_P001	Maize	nucleus	62.06	60.12
EER94486	Sorghum	nucleus	63.02	56.65
HORVU1Hr1G055930.1	Barley	nucleus	64.31	55.4
Os04t0548700-01	Rice	nucleus	41.8	52.63
KRH77331	Soybean	nucleus	41.48	48.13
PGSC0003DMT400067540	Potato	nucleus	41.48	46.91
GSMUA_AchrUn_...	Banana	plastid	46.62	46.47
Solyc08g078300.2.1	Tomato	nucleus	41.8	46.43
GSMUA_Achr4P21600_001	Banana	nucleus	41.16	46.21
Solyc08g007270.2.1	Tomato	nucleus	40.51	45.82
KRH57467	Soybean	nucleus	43.73	45.64
VIT_00s0299g00100.t01	Wine grape	nucleus	43.09	45.12
KRH28155	Soybean	nucleus	41.16	44.91
KRH04179	Soybean	nucleus	43.09	44.82
PGSC0003DMT400032546	Potato	nucleus	40.19	44.64
GSMUA_Achr7P06950_001	Banana	nucleus	25.4	43.65
AT4G16780.1	Thale cress	nucleus	39.55	43.31
Os03t0231150-00	Rice	cytosol, extracellular	14.79	42.99
Solyc06g060830.2.1	Tomato	nucleus	40.84	42.62
Os06t0140400-01	Rice	nucleus	35.05	42.58
Bra040094.1-P	Field mustard	nucleus	38.91	42.46
PGSC0003DMT400062081	Potato	nucleus	41.16	41.97
GSMUA_Achr1P04360_001	Banana	nucleus	40.51	41.72
Os01t0643600-00	Rice	nucleus	28.3	38.43
Os06t0698200-00	Rice	nucleus	30.55	37.11
Os06t0140700-01	Rice	nucleus	36.01	36.36
Os02t0149900-00	Rice	nucleus	25.08	31.45
Os02t0565600-01	Rice	extracellular, nucleus	32.15	28.65

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EntrezGene:4349388	ProteinID:AAK31270.1	ProteinID:AAP55020.1	EMBL:AK065404
ProteinID:BAF27226.1	ProteinID:BAT12064.1	ncoils:Coil	ProteinID:EAZ16980.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HD-ZIP_N	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	EnsemblPlantsGene:Os10g0561800	EnsemblPlants:Os10t0561800-01	PFAM:PF00046
PFAM:PF02183	PFAM:PF04618	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF514
UniProt:Q7XC54	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI00000A85A9	RefSeq:XP_015613269.1
SEG:seg	:	:	:	:	:

Description

HOMEOBOX GENE 1Similar to homeodomain leucine zipper protein hox1. (Os10t0561800-01)

Coordinates

chr10:+:22152670..22154159

Molecular Weight (calculated)

33145.0 Da

IEP (calculated)

8.976

GRAVY (calculated)

-0.643

Length

311 amino acids

Sequence
(BLAST)

001: MEMMVHGRRD EQYGGLRLGL GLGLSLGVAG GAADDEQPPP RRGAAPPPQQ QLCGWNGGGL FSSSSSDHRG RSAMMACHDV IEMPFLRGID VNRAPAAETT
101: TTTARGPSCS EEDEEPGASS PNSTLSSLSG KRGAPSAATA AAAAASDDED SGGGSRKKLR LSKDQAAVLE DTFKEHNTLN PKQKAALARQ LNLKPRQVEV
201: WFQNRRARTK LKQTEVDCEL LKRCCETLTD ENRRLHRELQ ELRALKLATA AAAPHHLYGA RVPPPTTLTM CPSCERVASA ATTTRNNSGA APARPVPTRP
301: WPPAAAQRSS A

Best Arabidopsis Sequence Match ( AT3G60390.1 )
(BLAST)

001: MSERDDGLGL SLSLSLGFNQ KDPSSRLNPM PLASYASSSH MQHMQQSNYN HPQKIQNTWI NMFQSSERNS DMRSFLRGID VNRAPSTVVV DVEDEGAGVS
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH

Arabidopsis Description

HAT3Homeobox-leucine zipper protein HAT3 [Source:UniProtKB/Swiss-Prot;Acc:P46602]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.