Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d029934_P001 | Maize | nucleus | 78.61 | 84.74 |
| TraesCS1B01G232700.2 | Wheat | nucleus | 60.12 | 63.61 |
| TraesCS1D01G220900.1 | Wheat | nucleus | 59.54 | 63.19 |
| Os10t0561800-01 | Rice | nucleus | 56.65 | 63.02 |
| TraesCS1A01G219200.1 | Wheat | nucleus | 59.25 | 62.31 |
| EES12613 | Sorghum | nucleus | 38.73 | 57.51 |
| HORVU1Hr1G055930.1 | Barley | nucleus | 58.09 | 55.68 |
| KRH77331 | Soybean | nucleus | 41.04 | 52.99 |
| GSMUA_AchrUn_... | Banana | plastid | 45.38 | 50.32 |
| VIT_00s0299g00100.t01 | Wine grape | nucleus | 43.06 | 50.17 |
| KRH28155 | Soybean | nucleus | 40.17 | 48.77 |
| GSMUA_Achr4P21600_001 | Banana | nucleus | 39.02 | 48.74 |
| PGSC0003DMT400067540 | Potato | nucleus | 38.73 | 48.73 |
| Solyc08g078300.2.1 | Tomato | nucleus | 39.31 | 48.57 |
| Solyc08g007270.2.1 | Tomato | nucleus | 38.44 | 48.36 |
| KRH57467 | Soybean | nucleus | 41.62 | 48.32 |
| KRH04179 | Soybean | nucleus | 41.62 | 48.16 |
| PGSC0003DMT400032546 | Potato | nucleus | 38.15 | 47.14 |
| GSMUA_Achr7P06950_001 | Banana | nucleus | 24.57 | 46.96 |
| Bra040094.1-P | Field mustard | nucleus | 38.15 | 46.32 |
| AT4G16780.1 | Thale cress | nucleus | 37.86 | 46.13 |
| GSMUA_Achr1P04360_001 | Banana | nucleus | 38.73 | 44.37 |
| Solyc06g060830.2.1 | Tomato | nucleus | 37.57 | 43.62 |
| EER91838 | Sorghum | nucleus | 31.79 | 43.31 |
| PGSC0003DMT400062081 | Potato | nucleus | 37.57 | 42.62 |
| EER92607 | Sorghum | nucleus | 36.13 | 41.81 |
| EES03343 | Sorghum | nucleus | 25.72 | 38.7 |
| EER87812 | Sorghum | nucleus | 31.21 | 37.89 |
| EER90307 | Sorghum | nucleus | 25.43 | 37.29 |
| EER98990 | Sorghum | nucleus | 39.6 | 37.13 |
| KXG25294 | Sorghum | nucleus | 39.31 | 35.6 |
| EER87813 | Sorghum | plastid | 30.92 | 33.65 |
| OQU85171 | Sorghum | nucleus | 30.35 | 32.51 |
| EES04526 | Sorghum | nucleus | 21.97 | 29.34 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | EntrezGene:8055644 | UniProt:C5WRJ5 | ncoils:Coil | EnsemblPlants:EER94486 |
| ProteinID:EER94486 | ProteinID:EER94486.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:HD-ZIP_N | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo |
| PFAM:PF00046 | PFAM:PF02183 | PFAM:PF04618 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF514 | SMART:SM00340 | SMART:SM00389 | EnsemblPlantsGene:SORBI_3001G297200 | SUPFAM:SSF46689 | unigene:Sbi.4024 |
| UniParc:UPI0001A82F34 | RefSeq:XP_002467488.1 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:57719789..57721751
Molecular Weight (calculated)
37681.2 Da
IEP (calculated)
8.826
GRAVY (calculated)
-0.812
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMAVNARDE EKKYDGDDNH LGLGLSLSLG IATTAATPVE VDPPPRQQQQ QRAISVAPIS SLPAPQWWNG PAGLFFSPSS GMKMDPSLER KHQHQQQQQQ
101: QAAATSYSHD MPFLRGIDVN RRATAGETRR GRSCSEDEEP GASSPNSTLS SLSGKRAAPA RSSGEVDREA DGHTPRAGGG GSDDEDSGAG GGSRKKLRLS
201: KDQAAVLEDS FKEHNTLNPK QKAALAKQLN LKPRQVEVWF QNRRARTKLK QTEVDCEFLK RCCETLTEEN RRLQREVAEL RALKLVAPHH YARMPPPTTL
301: TMCPSCERLA SAPADEAVAG RTAAPTGPWG PLPVRPVFVD GPARRS
101: QAAATSYSHD MPFLRGIDVN RRATAGETRR GRSCSEDEEP GASSPNSTLS SLSGKRAAPA RSSGEVDREA DGHTPRAGGG GSDDEDSGAG GGSRKKLRLS
201: KDQAAVLEDS FKEHNTLNPK QKAALAKQLN LKPRQVEVWF QNRRARTKLK QTEVDCEFLK RCCETLTEEN RRLQREVAEL RALKLVAPHH YARMPPPTTL
301: TMCPSCERLA SAPADEAVAG RTAAPTGPWG PLPVRPVFVD GPARRS
001: MSERDDGLGL SLSLSLGFNQ KDPSSRLNPM PLASYASSSH MQHMQQSNYN HPQKIQNTWI NMFQSSERNS DMRSFLRGID VNRAPSTVVV DVEDEGAGVS
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH
Arabidopsis Description
HAT3Homeobox-leucine zipper protein HAT3 [Source:UniProtKB/Swiss-Prot;Acc:P46602]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.