CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050834_P001	Maize	nucleus	75.54	73.72
Os02t0565600-01	Rice	extracellular, nucleus	59.75	55.3
EES12613	Sorghum	nucleus	29.1	40.34
EER91838	Sorghum	nucleus	30.65	38.98
EER90307	Sorghum	nucleus	26.63	36.44
EES03343	Sorghum	nucleus	25.39	35.65
EER87812	Sorghum	nucleus	30.34	34.39
EER87813	Sorghum	plastid	33.44	33.96
HORVU1Hr1G082910.2	Barley	nucleus	32.51	33.55
EER92607	Sorghum	nucleus	30.96	33.44
TraesCS1D01G379700.1	Wheat	nucleus	30.96	32.89
TraesCS1A01G372900.1	Wheat	nucleus	30.96	32.79
TraesCS1B01G393100.1	Wheat	nucleus	30.65	32.35
EER94486	Sorghum	nucleus	32.51	30.35
EER98990	Sorghum	nucleus	32.82	28.73
KXG25294	Sorghum	nucleus	32.2	27.23
EES04526	Sorghum	nucleus	21.05	26.25

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	UniProt:A0A1Z5RNK7	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:Leu_zip_homeo	EnsemblPlants:OQU85171	ProteinID:OQU85171	ProteinID:OQU85171.1	PFAM:PF00046	PFAM:PF02183
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF192	SMART:SM00340	SMART:SM00389
EnsemblPlantsGene:SORBI_3004G185200	SUPFAM:SSF46689	UniParc:UPI000B423E0E	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:53801359..53803654

Molecular Weight (calculated)

35198.4 Da

IEP (calculated)

6.316

GRAVY (calculated)

-0.437

Length

323 amino acids

Sequence
(BLAST)

001: MELELSLGDS RAPAKSTFMP ALTPIHAGEG EGHELVLELG VGTAKRAEQD NQKTVVQAEA VQEEEEETCS YNESPVELSL VCPLLPASTE IGTVYSEVCG
101: RGSDVNTVLV DGDTAQGRSL STSSLALEVP VRQTADQEAA EDAEISGVGG GTRKKLRLSM EQSAFLEDIF KAHSTLSPKQ KSDLANRLSL RPRQVEVWFQ
201: NRRARTKLKQ TEVDCEYLKR CCENLAQENR RLQREVAELR AQRISNTAAY TFYGHHLPAS GFSTARVCPS CDKNKGTAHY TAISAPSAVV TPPSAVSTTL
301: FARPHFGPFT IHPLLRRQPS ATS

Best Arabidopsis Sequence Match ( AT3G60390.1 )
(BLAST)

001: MSERDDGLGL SLSLSLGFNQ KDPSSRLNPM PLASYASSSH MQHMQQSNYN HPQKIQNTWI NMFQSSERNS DMRSFLRGID VNRAPSTVVV DVEDEGAGVS
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH

Arabidopsis Description

HAT3Homeobox-leucine zipper protein HAT3 [Source:UniProtKB/Swiss-Prot;Acc:P46602]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.