Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| EES01354 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06710.1 | EES01354 | AT4G26100.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d031745_P001 | Maize | plastid | 81.41 | 70.2 |
| GSMUA_Achr3P07740_001 | Banana | nucleus | 33.77 | 66.49 |
| EER98990 | Sorghum | nucleus | 56.81 | 58.81 |
| GSMUA_Achr9P15710_001 | Banana | nucleus | 45.55 | 55.77 |
| EES12613 | Sorghum | nucleus | 31.15 | 51.07 |
| KRH67080 | Soybean | nucleus | 38.22 | 50.69 |
| KRG95402 | Soybean | nucleus, plastid | 37.7 | 49.32 |
| GSMUA_Achr7P02380_001 | Banana | nucleus | 37.17 | 49.31 |
| VIT_08s0007g06670.t01 | Wine grape | nucleus | 41.62 | 48.04 |
| VIT_13s0156g00260.t01 | Wine grape | nucleus | 44.5 | 47.49 |
| EER91838 | Sorghum | nucleus | 31.41 | 47.24 |
| KRH71831 | Soybean | plastid | 39.53 | 45.9 |
| CDX81016 | Canola | nucleus | 30.89 | 45.38 |
| KRH38083 | Soybean | nucleus | 38.74 | 45.26 |
| GSMUA_Achr8P22800_001 | Banana | nucleus | 31.15 | 44.91 |
| Solyc01g073910.2.1 | Tomato | nucleus | 42.67 | 44.66 |
| EER92607 | Sorghum | nucleus | 34.82 | 44.48 |
| PGSC0003DMT400016146 | Potato | nucleus | 43.19 | 44.24 |
| KRH43419 | Soybean | nucleus | 42.93 | 43.5 |
| KRH13873 | Soybean | nucleus | 42.93 | 42.71 |
| EES03343 | Sorghum | nucleus | 25.39 | 42.17 |
| PGSC0003DMT400060951 | Potato | nucleus | 38.74 | 42.17 |
| Solyc10g080540.1.1 | Tomato | nucleus | 38.74 | 41.81 |
| CDX98948 | Canola | nucleus | 36.91 | 41.59 |
| CDX70076 | Canola | nucleus | 36.65 | 41.18 |
| Bra009219.1-P | Field mustard | nucleus | 36.65 | 41.18 |
| Bra005907.1-P | Field mustard | nucleus | 34.55 | 40.99 |
| EER90307 | Sorghum | nucleus | 25.13 | 40.68 |
| AT5G06710.1 | Thale cress | nucleus | 35.6 | 40.48 |
| EER87812 | Sorghum | nucleus | 30.1 | 40.35 |
| CDY55775 | Canola | nucleus | 33.77 | 40.06 |
| EER94486 | Sorghum | nucleus | 35.6 | 39.31 |
| EER87813 | Sorghum | plastid | 29.58 | 35.53 |
| CDX78884 | Canola | nucleus | 23.04 | 34.92 |
| OQU85171 | Sorghum | nucleus | 27.23 | 32.2 |
| EES04526 | Sorghum | nucleus | 20.68 | 30.5 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | UniProt:A0A1B6PHX6 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| EnsemblPlants:KXG25294 | ProteinID:KXG25294 | ProteinID:KXG25294.1 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 |
| ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF105 | SMART:SM00340 | SMART:SM00389 |
| EnsemblPlantsGene:SORBI_3007G152300 | SUPFAM:SSF46689 | UniParc:UPI0003C660A4 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr7:-:58474408..58476809
Molecular Weight (calculated)
39142.7 Da
IEP (calculated)
8.077
GRAVY (calculated)
-0.341
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MELRLSLGEA AVPDAGRAAV PELGLGLGVG IGASAAAGSG RREEGGTGNR AAPGTGTGTG TRWWAAPATP EPAAVRLSLV SSSLGLQWPP SDAGICHAGR
101: AEAPAARGFD VNRPAPSSSA VAASALLALE DDEDDPGAAA ALSSSPNDSA GSFPLDLGGG PHAHHAEGGA AAQAAGGGGE RSSSRASDED DGASARKKLR
201: LSKEQSAFLE ESFKEHSTLN PKQKAALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEY LKRCCETLTE ENRRLHKELA ELRALKAAPP FFMRLPATTL
301: SMCPSCERVA SGPNPAASTS APVSLSSSSP PATATATAVA APVVRGEHRP PSSFAALFAA TRSFTLASQP RPPAPAPASN CL
101: AEAPAARGFD VNRPAPSSSA VAASALLALE DDEDDPGAAA ALSSSPNDSA GSFPLDLGGG PHAHHAEGGA AAQAAGGGGE RSSSRASDED DGASARKKLR
201: LSKEQSAFLE ESFKEHSTLN PKQKAALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEY LKRCCETLTE ENRRLHKELA ELRALKAAPP FFMRLPATTL
301: SMCPSCERVA SGPNPAASTS APVSLSSSSP PATATATAVA APVVRGEHRP PSSFAALFAA TRSFTLASQP RPPAPAPASN CL
001: MELALSLGDN TKKQFSFMEK NSKINNPSVS STSTSEKDLG FCMALDVAFG GHRSLSSSSS PSVEDEKKKP APRAKKSDEF RVSSSVDPPL QLQLHFPNWL
101: PENSKGRQGG RMPLGAATVV EEEEEEEEAV PSMSVSPPDS VTSSFQLDFG IKSYGYERRS NKRDIDDEVE RSASRASNED NDDENGSTRK KLRLSKDQSA
201: FLEDSFKEHS TLNPKQKIAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRTLKT STPFYMQLPA TTLTMCPSCE
301: RVATSAAQPS TSAAHNLCLS TSSLIPVKPR PAKQVS
101: PENSKGRQGG RMPLGAATVV EEEEEEEEAV PSMSVSPPDS VTSSFQLDFG IKSYGYERRS NKRDIDDEVE RSASRASNED NDDENGSTRK KLRLSKDQSA
201: FLEDSFKEHS TLNPKQKIAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRTLKT STPFYMQLPA TTLTMCPSCE
301: RVATSAAQPS TSAAHNLCLS TSSLIPVKPR PAKQVS
Arabidopsis Description
HAT14Homeobox-leucine zipper protein HAT14 [Source:UniProtKB/Swiss-Prot;Acc:P46665]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.