CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028304_P001	Maize	nucleus	86.29	88.36
Zm00001d047995_P001	Maize	nucleus	82.27	83.11
TraesCS4A01G059600.1	Wheat	nucleus	69.9	76.0
TraesCS4B01G235300.2	Wheat	nucleus	70.57	75.63
TraesCS4D01G236600.1	Wheat	nucleus	69.23	75.55
HORVU4Hr1G065900.5	Barley	nucleus	69.9	74.38
Os03t0231150-00	Rice	cytosol, extracellular	25.42	71.03
EER91838	Sorghum	nucleus	45.15	53.15
EES12613	Sorghum	nucleus	34.78	44.64
EES03343	Sorghum	nucleus	33.78	43.91
EER90307	Sorghum	nucleus	30.43	38.56
EER87812	Sorghum	nucleus	34.78	36.49
EER94486	Sorghum	nucleus	41.81	36.13
EER98990	Sorghum	nucleus	44.48	36.04
EER87813	Sorghum	plastid	37.46	35.22
KXG25294	Sorghum	nucleus	44.48	34.82
OQU85171	Sorghum	nucleus	33.44	30.96
EES04526	Sorghum	nucleus	25.08	28.96

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EntrezGene:8085250	UniProt:C5WRR4	ncoils:Coil	EnsemblPlants:EER92607
ProteinID:EER92607	ProteinID:EER92607.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	PFAM:PF00046
PFAM:PF02183	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF271	SMART:SM00340
SMART:SM00389	EnsemblPlantsGene:SORBI_3001G447400	SUPFAM:SSF46689	unigene:Sbi.8148	UniParc:UPI0001A827A3	RefSeq:XP_002465609.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:72474590..72477017

Molecular Weight (calculated)

31693.3 Da

IEP (calculated)

8.161

GRAVY (calculated)

-0.502

Length

299 amino acids

Sequence
(BLAST)

001: MAQEDVHHLD DAGLALGLSL GGGGASDAVR HGTSSSRLSM EAVARLPSPR PQLEPSLTLS MPDEATATAT GSGGGGGGAA HSVSSLSVAG VKRERVDDAE
101: GERASSTTAA AAARAVSAGA EDDDDGSTRK KLRLTKEQSA LLEDRFKEHS TLNPKQKVAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CELLKRCCES
201: LTEENRRLQR ELQELRALKF APLHPQAAQA PPSSAAQAAG VPAPPQPFYM QMQLPAATLS LCPSCERLAG PAAAAKAEPD RPKAATHHFF NPFTHSAAC

Best Arabidopsis Sequence Match ( AT4G37790.1 )
(BLAST)

001: MGLDDSCNTG LVLGLGLSPT PNNYNHAIKK SSSTVDHRFI RLDPSLTLSL SGESYKIKTG AGAGDQICRQ TSSHSGISSF SSGRVKRERE ISGGDGEEEA
101: EETTERVVCS RVSDDHDDEE GVSARKKLRL TKQQSALLED NFKLHSTLNP KQKQALARQL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KKCCETLTDE
201: NRRLQKELQD LKALKLSQPF YMHMPAATLT MCPSCERLGG GGVGGDTTAV DEETAKGAFS IVTKPRFYNP FTNPSAAC

Arabidopsis Description

HAT22Homeobox-leucine zipper protein HAT22 [Source:UniProtKB/Swiss-Prot;Acc:P46604]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.