CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045398_P001	Maize	nucleus	75.47	81.91
Os06t0140700-01	Rice	nucleus	72.01	74.35
TraesCS7D01G078800.1	Wheat	nucleus	62.58	67.0
TraesCS7A01G084000.1	Wheat	nucleus	53.77	58.76
TraesCS4A01G382300.1	Wheat	nucleus	52.2	58.25
HORVU7Hr1G018780.2	Barley	nucleus	62.89	57.97
TraesCS4A01G382400.1	Wheat	nucleus	61.95	57.27
TraesCS7D01G078900.1	Wheat	nucleus	49.37	56.07
TraesCS7A01G083900.1	Wheat	nucleus	31.45	52.91
EER87812	Sorghum	nucleus	45.6	50.88
EER91838	Sorghum	nucleus	36.16	45.28
EES12613	Sorghum	nucleus	32.7	44.64
EES03343	Sorghum	nucleus	28.3	39.13
EER92607	Sorghum	nucleus	35.22	37.46
OQU85171	Sorghum	nucleus	33.96	33.44
EER90307	Sorghum	nucleus	23.9	32.2
EER94486	Sorghum	nucleus	33.65	30.92
EER98990	Sorghum	nucleus	35.22	30.35
EES04526	Sorghum	nucleus	24.21	29.73
KXG25294	Sorghum	nucleus	35.53	29.58

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EntrezGene:8070710	UniProt:C5Z3S7	ncoils:Coil	EnsemblPlants:EER87813
ProteinID:EER87813	ProteinID:EER87813.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo
PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF210	SMART:SM00340	SMART:SM00389	EnsemblPlantsGene:SORBI_3010G030200	SUPFAM:SSF46689	unigene:Sbi.1150
UniParc:UPI0001A88F11	RefSeq:XP_002436446.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:2464191..2466076

Molecular Weight (calculated)

33414.2 Da

IEP (calculated)

9.844

GRAVY (calculated)

-0.434

Length

318 amino acids

Sequence
(BLAST)

001: MMPRTSLDLG LSLGLSLTSQ GSLSSSTTTA GSSSPWAAAL SSVVADVAKA RDAGAHMLYH ASASAAALDR AAMRASTSPD SAAALSSGGS GDNTTGTKRE
101: RETELERTGS GGVRSDEEDG VDGAGGRKKL RLSKDQAAVL EECFKTHSTL NPKQKLALAT RLGLRPRQVE VWFQNRRART KLKQTEVDCE YLKRWCERLA
201: DENKRLEKEL ADLRALKAAP SPAAAQPASP AATLTMCPSC RRVAATATAA ASPTKHHHHQ QQQCHPKPSS SLTPAAAAAA GGAGSVVPSH CQFFPAAVDR
301: TSQSTWSTAA PLVTRELF

Best Arabidopsis Sequence Match ( AT4G17460.1 )
(BLAST)

001: MMMGKEDLGL SLSLGFAQNH PLQLNLKPTS SPMSNLQMFP WNQTLVSSSD QQKQQFLRKI DVNSLPTTVD LEEETGVSSP NSTISSTVSG KRRSTEREGT
101: SGGGCGDDLD ITLDRSSSRG TSDEEEDYGG ETCRKKLRLS KDQSAVLEDT FKEHNTLNPK QKLALAKKLG LTARQVEVWF QNRRARTKLK QTEVDCEYLK
201: RCVEKLTEEN RRLEKEAAEL RALKLSPRLY GQMSPPTTLL MCPSCERVAG PSSSNHNQRS VSLSPWLQMA HGSTFDVMRP RS

Arabidopsis Description

HAT1Homeobox-leucine zipper protein HAT1 [Source:UniProtKB/Swiss-Prot;Acc:P46600]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.