Factsheet for TraesCS4A01G382300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G084000.1	Wheat	nucleus	85.96	84.19
TraesCS7A01G083900.1	Wheat	nucleus	50.88	76.72
TraesCS7A01G083800.1	Wheat	nucleus	67.37	72.18
TraesCS4A01G382200.1	Wheat	nucleus	67.37	72.18
TraesCS4A01G382400.1	Wheat	nucleus	69.82	57.85
Zm00001d045398_P001	Maize	nucleus	55.44	53.92
EER87813	Sorghum	plastid	58.25	52.2
Os06t0140700-01	Rice	nucleus	55.09	50.97
TraesCS2A01G415900.1	Wheat	nucleus	33.68	42.29
TraesCS3A01G231600.1	Wheat	nucleus	29.82	38.29
TraesCS4A01G059600.1	Wheat	nucleus	36.14	37.45
TraesCS6A01G120300.1	Wheat	nucleus	26.32	36.95
TraesCS1A01G219200.1	Wheat	nucleus	39.3	34.04
TraesCS7A01G423800.1	Wheat	nucleus	25.96	33.79
TraesCS5A01G232700.1	Wheat	nucleus	39.3	31.91
TraesCS6A01G120600.1	Wheat	nucleus	25.26	31.86
TraesCS1A01G372900.1	Wheat	nucleus	34.04	31.8

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF233	SMART:SM00340	SMART:SM00389
SUPFAM:SSF46689	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS4A01G382300	EnsemblPlants:TraesCS4A01G382300.1	TIGR:cd00086	SEG:seg

Description

No Description!

Coordinates

chr4A:+:660624461..660625424

Molecular Weight (calculated)

30377.0 Da

IEP (calculated)

9.782

GRAVY (calculated)

-0.517

Length

285 amino acids

Sequence
(BLAST)

001: MMHHAAGLDL GLGLGLGLAS QGSLTSSTTT ASSSPASQAH AQHWTAAFSS VVGAQEYERQ QLLHRKEEPG MRPSTSPESG VSAGTKRGLE PTGSGVSPAT
101: GSDEDDDGAG GRKKLRLSKD QAAVLEECFK MHSTLNPKQK TALANRLGLR PRQVEVWFQN RRARTKLKQT EVDCEYMKRW CEQLAEQNRR LEKEVTELRA
201: LKAAPPAHNG AAAGPLTTLT RCLSCKRVAS TSSASACNVP SFSANAGIGM PMPSLEERPF LCGFRDTGVT YGGSSGLAKV VKPAR

Best Arabidopsis Sequence Match ( AT3G60390.1 )
(BLAST)

001: MSERDDGLGL SLSLSLGFNQ KDPSSRLNPM PLASYASSSH MQHMQQSNYN HPQKIQNTWI NMFQSSERNS DMRSFLRGID VNRAPSTVVV DVEDEGAGVS
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH

Arabidopsis Description

HAT3Homeobox-leucine zipper protein HAT3 [Source:UniProtKB/Swiss-Prot;Acc:P46602]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.