Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G412900.1 | Wheat | nucleus | 97.36 | 96.09 |
| TraesCS2B01G434900.1 | Wheat | nucleus | 96.04 | 94.78 |
| HORVU2Hr1G097940.2 | Barley | nucleus | 91.63 | 92.44 |
| EES12613 | Sorghum | nucleus | 84.14 | 81.97 |
| Zm00001d002754_P001 | Maize | nucleus | 81.94 | 81.94 |
| Os04t0548700-01 | Rice | nucleus | 85.46 | 78.54 |
| KRH77331 | Soybean | nucleus | 55.51 | 47.01 |
| PGSC0003DMT400067540 | Potato | nucleus | 53.3 | 44.0 |
| Solyc08g078300.2.1 | Tomato | nucleus | 53.74 | 43.57 |
| Solyc08g007270.2.1 | Tomato | nucleus | 51.98 | 42.91 |
| KRH28155 | Soybean | nucleus | 53.74 | 42.81 |
| TraesCS1A01G219200.1 | Wheat | nucleus | 61.23 | 42.25 |
| PGSC0003DMT400032546 | Potato | nucleus | 51.98 | 42.14 |
| Bra040094.1-P | Field mustard | nucleus | 51.98 | 41.4 |
| AT4G16780.1 | Thale cress | nucleus | 51.54 | 41.2 |
| KRH57467 | Soybean | nucleus | 53.74 | 40.94 |
| VIT_00s0299g00100.t01 | Wine grape | nucleus | 53.3 | 40.74 |
| GSMUA_Achr4P21600_001 | Banana | nucleus | 49.34 | 40.43 |
| KRH04179 | Soybean | nucleus | 52.86 | 40.13 |
| GSMUA_AchrUn_... | Banana | plastid | 55.07 | 40.06 |
| TraesCS3A01G231600.1 | Wheat | nucleus | 38.77 | 39.64 |
| Solyc06g060830.2.1 | Tomato | nucleus | 51.1 | 38.93 |
| TraesCS7A01G423800.1 | Wheat | nucleus | 37.44 | 38.81 |
| TraesCS6A01G120300.1 | Wheat | nucleus | 34.36 | 38.42 |
| TraesCS4A01G059600.1 | Wheat | nucleus | 46.26 | 38.18 |
| PGSC0003DMT400062081 | Potato | nucleus | 51.1 | 38.03 |
| GSMUA_Achr1P04360_001 | Banana | nucleus | 47.58 | 35.76 |
| TraesCS4A01G382200.1 | Wheat | nucleus | 41.41 | 35.34 |
| TraesCS7A01G083800.1 | Wheat | nucleus | 41.41 | 35.34 |
| TraesCS4A01G382300.1 | Wheat | nucleus | 42.29 | 33.68 |
| TraesCS7A01G084000.1 | Wheat | nucleus | 43.17 | 33.68 |
| GSMUA_Achr7P06950_001 | Banana | nucleus | 26.43 | 33.15 |
| TraesCS5A01G232700.1 | Wheat | nucleus | 50.66 | 32.76 |
| TraesCS6A01G120600.1 | Wheat | nucleus | 32.6 | 32.74 |
| TraesCS4A01G382400.1 | Wheat | nucleus | 43.61 | 28.78 |
| TraesCS7A01G083900.1 | Wheat | nucleus | 23.79 | 28.57 |
| TraesCS1A01G372900.1 | Wheat | nucleus | 37.44 | 27.87 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 |
| ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF199 | SMART:SM00340 | SMART:SM00389 |
| SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS2A01G415900 | EnsemblPlants:TraesCS2A01G415900.1 | TIGR:cd00086 | SEG:seg | : |
Description
No Description!
Coordinates
chr2A:+:672415211..672416239
Molecular Weight (calculated)
25676.6 Da
IEP (calculated)
8.602
GRAVY (calculated)
-0.824
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MMERAEDLGL SLSLSSSLAP RTHHVAMLLH APERRLLEMP LLPAKRVCEV SADEERSGQR GGSDDEDGGC GMDGSRKKLR LSKDQSAVLE DSFREHPTLN
101: PRQKAALAQQ LGLRSRQVEV WFQNRRARTK LKQTEVDCEF LKRCCETLTE ENRRLQKEVQ ELRALKLVSP HHYMHMSPPT TLTMCPSCER VSNNNNNNNN
201: NSTAADRRNG VEGAICHRPI AVRPQQS
101: PRQKAALAQQ LGLRSRQVEV WFQNRRARTK LKQTEVDCEF LKRCCETLTE ENRRLQKEVQ ELRALKLVSP HHYMHMSPPT TLTMCPSCER VSNNNNNNNN
201: NSTAADRRNG VEGAICHRPI AVRPQQS
001: MMFEKDDLGL SLGLNFPKKQ INLKSNPSVS VTPSSSSFGL FRRSSWNESF TSSVPNSDSS QKETRTFIRG IDVNRPPSTA EYGDEDAGVS SPNSTVSSST
101: GKRSEREEDT DPQGSRGISD DEDGDNSRKK LRLSKDQSAI LEETFKDHST LNPKQKQALA KQLGLRARQV EVWFQNRRAR TKLKQTEVDC EFLRRCCENL
201: TEENRRLQKE VTELRALKLS PQFYMHMSPP TTLTMCPSCE HVSVPPPQPQ AATSAHHRSL PVNAWAPATR ISHGLTFDAL RPRS
101: GKRSEREEDT DPQGSRGISD DEDGDNSRKK LRLSKDQSAI LEETFKDHST LNPKQKQALA KQLGLRARQV EVWFQNRRAR TKLKQTEVDC EFLRRCCENL
201: TEENRRLQKE VTELRALKLS PQFYMHMSPP TTLTMCPSCE HVSVPPPQPQ AATSAHHRSL PVNAWAPATR ISHGLTFDAL RPRS
Arabidopsis Description
HAT4Homeobox-leucine zipper protein HAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q05466]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.