Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G251600.2 | |
| TraesCS3B01G281100.2 | |
| TraesCS3D01G252000.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06710.1 | TraesCS3A01G251600.2 | AT4G26100.1 | 21798944 |
| AT5G06710.1 | TraesCS3B01G281100.2 | AT4G26100.1 | 21798944 |
| AT5G06710.1 | TraesCS3D01G252000.2 | AT4G26100.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0447000-00 | Rice | nucleus | 24.51 | 96.67 |
| TraesCS5D01G235300.1 | Wheat | nucleus | 90.99 | 95.28 |
| TraesCS5A01G232700.1 | Wheat | nucleus | 90.99 | 92.02 |
| HORVU5Hr1G067010.2 | Barley | nucleus | 84.79 | 76.59 |
| Zm00001d020670_P001 | Maize | nucleus | 67.61 | 72.07 |
| EER98990 | Sorghum | nucleus | 71.83 | 69.11 |
| GSMUA_Achr3P07740_001 | Banana | nucleus | 37.46 | 68.56 |
| GSMUA_Achr9P15710_001 | Banana | nucleus | 52.39 | 59.62 |
| Zm00001d005875_P001 | Maize | nucleus | 46.76 | 51.08 |
| GSMUA_Achr7P02380_001 | Banana | nucleus | 41.41 | 51.04 |
| KRG95402 | Soybean | nucleus, plastid | 41.97 | 51.03 |
| VIT_08s0007g06670.t01 | Wine grape | nucleus | 47.04 | 50.45 |
| KRH67080 | Soybean | nucleus | 40.85 | 50.35 |
| TraesCS2B01G434900.1 | Wheat | nucleus | 32.39 | 50.0 |
| VIT_13s0156g00260.t01 | Wine grape | nucleus | 47.61 | 47.21 |
| TraesCS4B01G235300.2 | Wheat | nucleus | 36.62 | 46.59 |
| KRH71831 | Soybean | plastid | 43.1 | 46.5 |
| KRH38083 | Soybean | nucleus | 42.54 | 46.18 |
| CDX81016 | Canola | nucleus | 33.8 | 46.15 |
| TraesCS3B01G000100.1 | Wheat | nucleus | 29.3 | 45.61 |
| TraesCS3B01G260800.1 | Wheat | nucleus | 28.45 | 45.5 |
| GSMUA_Achr8P22800_001 | Banana | nucleus | 33.8 | 45.28 |
| KRH43419 | Soybean | nucleus | 45.63 | 42.97 |
| KRH13873 | Soybean | nucleus | 45.92 | 42.45 |
| Solyc01g073910.2.1 | Tomato | nucleus | 43.1 | 41.92 |
| CDX70076 | Canola | nucleus | 40.0 | 41.76 |
| Bra009219.1-P | Field mustard | nucleus | 40.0 | 41.76 |
| AT5G06710.1 | Thale cress | nucleus | 39.44 | 41.67 |
| PGSC0003DMT400060951 | Potato | nucleus | 41.13 | 41.6 |
| CDX98948 | Canola | nucleus | 39.72 | 41.59 |
| PGSC0003DMT400016146 | Potato | nucleus | 43.66 | 41.55 |
| Solyc10g080540.1.1 | Tomato | nucleus | 40.85 | 40.96 |
| TraesCS6B01G148700.1 | Wheat | nucleus | 23.94 | 40.67 |
| Bra005907.1-P | Field mustard | nucleus | 36.62 | 40.37 |
| TraesCS7B01G326300.1 | Wheat | nucleus | 25.07 | 39.91 |
| TraesCS6B01G148800.1 | Wheat | nucleus | 23.38 | 39.71 |
| TraesCS1B01G232700.2 | Wheat | nucleus | 36.34 | 39.45 |
| TraesCS1B01G393100.1 | Wheat | nucleus | 33.8 | 39.22 |
| CDY55775 | Canola | nucleus | 35.49 | 39.13 |
| TraesCS6B01G149000.1 | Wheat | nucleus | 23.1 | 37.27 |
| CDX78884 | Canola | nucleus | 24.23 | 34.13 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | ScanProsite:PS00027 | PFscan:PS50071 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF514 | SMART:SM00340 | SMART:SM00389 | SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS5B01G231300 |
| EnsemblPlants:TraesCS5B01G231300.1 | TIGR:cd00086 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5B:-:407816831..407818230
Molecular Weight (calculated)
37051.3 Da
IEP (calculated)
6.670
GRAVY (calculated)
-0.448
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MELGLSLGEA MADAGRELVL GLGVGPGARR EEEGRRGQDV VAAVDRRGLA LGCGSSPEPT MRLTLLPMVP SLGFPWPSES RHLEASTRGF DVNQAPSSGG
101: SAWGACTAGA AAEEEQEDTA AAARAAVSSS PNDSGGSFPM DFSAQGDRGA SDAAPGAGGS RGSDEDDGGS ARKKLRLSKE QAAFLEESFK EHSTLNPRQK
201: VALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CETLTEENRR LQKELAELRA LKTVHPFYMH LPATTLSMCP SCERVASNSA PGTAAAPSPA
301: PASAAPAPAS GAGIGAAAAP EQHRPSSFAA LFSSARSFPL ASSQPQAPLP APSSS
101: SAWGACTAGA AAEEEQEDTA AAARAAVSSS PNDSGGSFPM DFSAQGDRGA SDAAPGAGGS RGSDEDDGGS ARKKLRLSKE QAAFLEESFK EHSTLNPRQK
201: VALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CETLTEENRR LQKELAELRA LKTVHPFYMH LPATTLSMCP SCERVASNSA PGTAAAPSPA
301: PASAAPAPAS GAGIGAAAAP EQHRPSSFAA LFSSARSFPL ASSQPQAPLP APSSS
001: MELALSLGDN TKKQFSFMEK NSKINNPSVS STSTSEKDLG FCMALDVAFG GHRSLSSSSS PSVEDEKKKP APRAKKSDEF RVSSSVDPPL QLQLHFPNWL
101: PENSKGRQGG RMPLGAATVV EEEEEEEEAV PSMSVSPPDS VTSSFQLDFG IKSYGYERRS NKRDIDDEVE RSASRASNED NDDENGSTRK KLRLSKDQSA
201: FLEDSFKEHS TLNPKQKIAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRTLKT STPFYMQLPA TTLTMCPSCE
301: RVATSAAQPS TSAAHNLCLS TSSLIPVKPR PAKQVS
101: PENSKGRQGG RMPLGAATVV EEEEEEEEAV PSMSVSPPDS VTSSFQLDFG IKSYGYERRS NKRDIDDEVE RSASRASNED NDDENGSTRK KLRLSKDQSA
201: FLEDSFKEHS TLNPKQKIAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRTLKT STPFYMQLPA TTLTMCPSCE
301: RVATSAAQPS TSAAHNLCLS TSSLIPVKPR PAKQVS
Arabidopsis Description
HAT14Homeobox-leucine zipper protein HAT14 [Source:UniProtKB/Swiss-Prot;Acc:P46665]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.