Factsheet for Bra009219.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007530.1-P
Bra010612.1-P
Bra011786.1-P
Bra013949.1-P
Bra017489.1-P
Bra017853.1-P
Bra024948.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06710.1	Bra007530.1-P	AT3G60390.1	21798944
AT5G06710.1	Bra013949.1-P	AT4G26100.1	21798944
AT5G06710.1	Bra010612.1-P	AT4G37790.1	21798944
AT5G06710.1	Bra011786.1-P	AT4G37790.1	21798944
AT5G06710.1	Bra017853.1-P	AT4G37790.1	21798944
AT5G06710.1	Bra017489.1-P	AT5G47370.1	21798944
AT5G06710.1	Bra024948.1-P	AT5G47370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70076	Canola	nucleus	100.0	100.0
CDX98948	Canola	nucleus	95.88	96.17
CDX78884	Canola	nucleus	68.82	92.86
Os09t0447000-00	Rice	nucleus	24.12	91.11
Bra005907.1-P	Field mustard	nucleus	81.76	86.34
AT5G06710.1	Thale cress	nucleus	83.24	84.23
GSMUA_Achr3P07740_001	Banana	nucleus	32.35	56.7
Bra026666.1-P	Field mustard	nucleus	24.71	53.85
KRH67080	Soybean	nucleus	44.41	52.43
KRG95402	Soybean	nucleus, plastid	44.12	51.37
Bra017451.1-P	Field mustard	nucleus	23.53	50.0
Bra017489.1-P	Field mustard	nucleus	39.12	49.26
VIT_08s0007g06670.t01	Wine grape	nucleus	47.94	49.24
KRH38083	Soybean	nucleus	46.76	48.62
KRH71831	Soybean	plastid	46.76	48.33
Bra024948.1-P	Field mustard	nucleus	38.53	47.46
Bra026255.1-P	Field mustard	nucleus	38.24	47.45
Bra004874.1-P	Field mustard	nucleus	40.59	46.78
Bra040094.1-P	Field mustard	nucleus	38.82	46.32
VIT_13s0156g00260.t01	Wine grape	nucleus	48.24	45.81
Bra024888.1-P	Field mustard	nucleus	26.47	45.69
GSMUA_Achr8P22800_001	Banana	nucleus	35.29	45.28
Bra012663.1-P	Field mustard	nucleus	37.94	45.26
GSMUA_Achr7P02380_001	Banana	nucleus	38.24	45.14
Bra007530.1-P	Field mustard	nucleus	40.59	44.37
Solyc10g080540.1.1	Tomato	nucleus	45.88	44.07
PGSC0003DMT400060951	Potato	nucleus	45.29	43.87
Zm00001d020670_P001	Maize	nucleus	42.65	43.54
GSMUA_Achr9P15710_001	Banana	nucleus	39.71	43.27
KRH43419	Soybean	nucleus	47.35	42.71
Bra017853.1-P	Field mustard	nucleus	35.29	42.7
Solyc01g073910.2.1	Tomato	nucleus	45.59	42.47
Zm00001d005875_P001	Maize	nucleus	40.59	42.46
Bra011786.1-P	Field mustard	nucleus	35.0	42.2
Bra040335.1-P	Field mustard	nucleus	39.71	42.06
PGSC0003DMT400016146	Potato	nucleus	45.88	41.82
KRH13873	Soybean	nucleus	47.06	41.67
Bra016174.1-P	Field mustard	nucleus	25.59	41.63
TraesCS5D01G235300.1	Wheat	nucleus	41.47	41.59
Bra007952.1-P	Field mustard	nucleus	25.0	41.46
Bra030200.1-P	Field mustard	nucleus	33.82	40.93
Bra010612.1-P	Field mustard	nucleus	32.35	40.74
TraesCS5A01G232700.1	Wheat	nucleus	41.47	40.17
TraesCS5B01G231300.1	Wheat	nucleus	41.76	40.0
EER98990	Sorghum	nucleus	42.94	39.57
KXG25294	Sorghum	nucleus	41.18	36.65
HORVU5Hr1G067010.2	Barley	nucleus	41.18	35.62
Zm00001d031745_P001	Maize	plastid	41.47	31.83

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra009219	EnsemblPlants:Bra009219.1	EnsemblPlants:Bra009219.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M4CYC2	PFAM:PF00046	PFAM:PF02183
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF105	SMART:SM00340	SMART:SM00389
SUPFAM:SSF46689	UniParc:UPI00025451C9	SEG:seg	:	:	:

Description

AT5G06710 (E=2e-127) HAT14 | HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA); DNA binding / transcription factor

Coordinates

chrA10:-:15698286..15700372

Molecular Weight (calculated)

37974.4 Da

IEP (calculated)

8.665

GRAVY (calculated)

-0.862

Length

340 amino acids

Sequence
(BLAST)

001: MELALCLGDN TNKFSFMEKP SKTNNNPSAS STSTSYKDLG FNMGLDVLGF GGHRSLSSSS SPSMEDEKNK NKRKLAPKEI DSDGFRVSSS VDPSLQLQLH
101: FPWLPENSRQ GGRMLSGATT FPEEEEEAAL SMSVSPPDSV TSSFRLDFGI KSYGYERRNN KRGNENDEVE RSTSRASNED NDDDNGATRK KLRLSKDQSA
201: FLEDSFKEHS TLNPKQKIAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRALKT SSPFCMQLPA TTLTMCPSCE
301: RVATSVSQPS STSAAHNIDL SKSSFHSPLI PVKPGPGKQV

Best Arabidopsis Sequence Match ( AT5G06710.1 )
(BLAST)

001: MELALSLGDN TKKQFSFMEK NSKINNPSVS STSTSEKDLG FCMALDVAFG GHRSLSSSSS PSVEDEKKKP APRAKKSDEF RVSSSVDPPL QLQLHFPNWL
101: PENSKGRQGG RMPLGAATVV EEEEEEEEAV PSMSVSPPDS VTSSFQLDFG IKSYGYERRS NKRDIDDEVE RSASRASNED NDDENGSTRK KLRLSKDQSA
201: FLEDSFKEHS TLNPKQKIAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRTLKT STPFYMQLPA TTLTMCPSCE
301: RVATSAAQPS TSAAHNLCLS TSSLIPVKPR PAKQVS

Arabidopsis Description

HAT14Homeobox-leucine zipper protein HAT14 [Source:UniProtKB/Swiss-Prot;Acc:P46665]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.