Factsheet for Bra007530.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra017489.1-P
Bra024948.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60390.1	Bra017489.1-P	AT5G47370.1	21798944
AT3G60390.1	Bra024948.1-P	AT5G47370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41168	Canola	nucleus	94.86	100.0
CDX71814	Canola	nucleus	91.0	99.3
AT3G60390.1	Thale cress	nucleus	88.42	87.3
Bra004874.1-P	Field mustard	nucleus	66.88	70.51
Bra040335.1-P	Field mustard	nucleus	70.42	68.22
KRH40151	Soybean	nucleus	45.98	62.45
KRH66562	Soybean	nucleus	58.84	59.03
PGSC0003DMT400066838	Potato	nucleus	54.66	59.03
KRH01102	Soybean	nucleus	54.66	58.62
Solyc01g090460.2.1	Tomato	nucleus	53.7	58.39
KRH48783	Soybean	nucleus	59.16	58.04
Bra040094.1-P	Field mustard	nucleus	52.09	56.84
Bra017489.1-P	Field mustard	nucleus	46.95	54.07
Bra026255.1-P	Field mustard	nucleus	47.27	53.65
Bra024948.1-P	Field mustard	nucleus	47.59	53.62
Bra026666.1-P	Field mustard	nucleus	26.69	53.21
Bra012663.1-P	Field mustard	nucleus	46.95	51.23
Bra017451.1-P	Field mustard	nucleus	25.4	49.38
Bra024888.1-P	Field mustard	nucleus	28.94	45.69
Bra007952.1-P	Field mustard	nucleus	27.97	42.44
Bra011786.1-P	Field mustard	nucleus	37.94	41.84
Bra010612.1-P	Field mustard	nucleus	36.01	41.48
Bra030200.1-P	Field mustard	nucleus	37.3	41.28
Bra017853.1-P	Field mustard	nucleus	36.98	40.93
Bra009219.1-P	Field mustard	nucleus	44.37	40.59
Bra016174.1-P	Field mustard	nucleus	27.01	40.19
Bra005907.1-P	Field mustard	nucleus	40.84	39.44

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra007530	EnsemblPlants:Bra007530.1	EnsemblPlants:Bra007530.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HD-ZIP_N	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M4CTI7	PFAM:PF00046
PFAM:PF02183	PFAM:PF04618	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF514
SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002542FC9	SEG:seg	:

Description

AT3G60390 (E=3e-097) HAT3 | HAT3 (HOMEOBOX-LEUCINE ZIPPER PROTEIN 3); transcription factor

Coordinates

chrA09:-:29640060..29641677

Molecular Weight (calculated)

34149.4 Da

IEP (calculated)

8.733

GRAVY (calculated)

-0.714

Length

311 amino acids

Sequence
(BLAST)

001: MGERDDGLGL SLSLSLGLNQ KESSPRLNPM PMASYSSSSH MHMQSHYNHP QKIQNSWIQM FQSSERNSDV GSFLRGLDVN RAPSRVVVDV EEDAGVSSPN
101: STVSSVMSGK RNERELVAAA GTGGGRTIED NEAERGSSSL GGGSDDEDGG GNGDDGSRKK LRLSKEQALV LEETFKEHST LNPKQKMALA KQLNLRTRQV
201: EVWFQNRRAR TKLKQTEVDC EYLKRCCENL TEENRRLQKE VSELRALKLS PQLYMHMKPP TTLTMCPSCE RVAVASSSVA PAPVMSSSSP MGPMSPWAAI
301: PLRQRPAAGS R

Best Arabidopsis Sequence Match ( AT3G60390.1 )
(BLAST)

001: MSERDDGLGL SLSLSLGFNQ KDPSSRLNPM PLASYASSSH MQHMQQSNYN HPQKIQNTWI NMFQSSERNS DMRSFLRGID VNRAPSTVVV DVEDEGAGVS
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH

Arabidopsis Description

HAT3Homeobox-leucine zipper protein HAT3 [Source:UniProtKB/Swiss-Prot;Acc:P46602]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.