Factsheet for Bra016174.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009822.1-P
Bra020486.1-P
Bra036535.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G70920.1	Bra009822.1-P	AT5G25160.1	21245844
AT1G70920.1	Bra020486.1-P	AT5G25160.1	21245844
AT1G70920.1	Bra036535.1-P	AT5G25160.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72758	Canola	nucleus	99.04	99.04
CDX96287	Canola	nucleus	81.34	93.92
AT1G70920.1	Thale cress	nucleus	81.82	83.01
Bra007952.1-P	Field mustard	nucleus	80.86	82.44
Bra026666.1-P	Field mustard	nucleus	40.67	54.49
GSMUA_Achr4P06480_001	Banana	nucleus	43.06	54.22
Bra017451.1-P	Field mustard	nucleus	39.71	51.88
Bra024888.1-P	Field mustard	nucleus	48.33	51.27
GSMUA_AchrUn_...	Banana	nucleus	52.15	50.0
GSMUA_Achr4P13440_001	Banana	nucleus	52.15	48.02
Zm00001d044081_P001	Maize	nucleus	51.67	48.0
TraesCS3A01G231600.1	Wheat	nucleus	49.76	46.85
TraesCS3D01G221800.1	Wheat	nucleus	49.28	46.4
TraesCS3B01G260800.1	Wheat	nucleus	49.28	46.4
Os01t0643600-00	Rice	nucleus	50.72	46.29
EES03343	Sorghum	nucleus	49.76	45.22
Bra026255.1-P	Field mustard	nucleus	39.23	29.93
Bra040094.1-P	Field mustard	nucleus	40.67	29.82
Bra024948.1-P	Field mustard	nucleus	39.23	29.71
Bra017489.1-P	Field mustard	nucleus	37.32	28.89
Bra017853.1-P	Field mustard	nucleus	38.76	28.83
Bra010612.1-P	Field mustard	nucleus	36.84	28.52
Bra004874.1-P	Field mustard	nucleus	39.71	28.14
Bra030200.1-P	Field mustard	nucleus	37.8	28.11
Bra012663.1-P	Field mustard	nucleus	38.28	28.07
Bra011786.1-P	Field mustard	nucleus	37.8	28.01
Bra007530.1-P	Field mustard	nucleus	40.19	27.01
Bra040335.1-P	Field mustard	nucleus	40.19	26.17
Bra005907.1-P	Field mustard	nucleus	40.19	26.09
Bra009219.1-P	Field mustard	nucleus	41.63	25.59

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra016174	EnsemblPlants:Bra016174.1	EnsemblPlants:Bra016174.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M4DI47	PFAM:PF00046	PFAM:PF02183
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF114	SMART:SM00340	SMART:SM00389
SUPFAM:SSF46689	UniParc:UPI00025412D4	SEG:seg	:	:	:

Description

AT1G70920 (E=6e-073) ATHB18 | ATHB18 (Arabidopsis thaliana homeobox-leucine zipper protein 18); DNA binding / transcription factor

Coordinates

chrA07:+:19034088..19036269

Molecular Weight (calculated)

23785.4 Da

IEP (calculated)

9.354

GRAVY (calculated)

-0.683

Length

209 amino acids

Sequence
(BLAST)

001: MAVSPNSSFL ELTIAIPSFS PSPSLPSSSD HMVRDLDINQ TPKMEKDREW IMISATPHVN DDDGNSGGRR RKKLRLTKDQ SHILEESFIQ NHTLTHKQKQ
101: ELATFLKLSQ RQVEVWFQNR RARSKLKHTE MECEYLKRLF GSLKEQNRQL QKEVEELRAL KPVSASVLTM CPRCERVTVA ADNGSNAVEE GTALRSQSRM
201: TISSSSTLC

Best Arabidopsis Sequence Match ( AT1G70920.1 )
(BLAST)

001: MALSPNSSSL DLTISIPSFS PSPSLGDHHG MRDFDINQTP KTEEDREWMI GATPHVNEDD SNSGGRRRKK LRLTKEQSHL LEESFIQNHT LTPKQKKDLA
101: TFLKLSQRQV EVWFQNRRAR SKLKHTEMEC EYLKRWFGSL KEQNRRLQIE VEELRALKPS STSALTMCPR CERVTDAVDN DSNAVQEGAV LSSRSRMTIS
201: SSSSLC

Arabidopsis Description

ATHB-XHomeobox-leucine zipper protein ATHB-X [Source:UniProtKB/Swiss-Prot;Acc:Q8GXM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.