Factsheet for Bra040335.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37015	Canola	nucleus	100.0	100.0
Bra004874.1-P	Field mustard	nucleus	69.47	75.59
AT2G44910.1	Thale cress	nucleus	74.45	75.16
Bra007530.1-P	Field mustard	nucleus	68.22	70.42
KRH40151	Soybean	nucleus	41.74	58.52
PGSC0003DMT400066838	Potato	nucleus	49.53	55.21
Solyc01g090460.2.1	Tomato	nucleus	48.6	54.55
KRH66562	Soybean	nucleus	52.02	53.87
KRH48783	Soybean	nucleus	52.96	53.63
KRH01102	Soybean	nucleus	48.29	53.45
Bra026255.1-P	Field mustard	nucleus	45.48	53.28
Bra024948.1-P	Field mustard	nucleus	45.79	53.26
Bra026666.1-P	Field mustard	nucleus	25.86	53.21
Bra017489.1-P	Field mustard	nucleus	44.55	52.96
Bra012663.1-P	Field mustard	nucleus	45.17	50.88
Bra040094.1-P	Field mustard	nucleus	44.55	50.18
Bra017451.1-P	Field mustard	nucleus	24.92	50.0
Bra024888.1-P	Field mustard	nucleus	28.04	45.69
Bra007952.1-P	Field mustard	nucleus	28.04	43.9
Bra017853.1-P	Field mustard	nucleus	37.07	42.35
Bra030200.1-P	Field mustard	nucleus	36.45	41.64
Bra011786.1-P	Field mustard	nucleus	36.45	41.49
Bra010612.1-P	Field mustard	nucleus	34.58	41.11
Bra016174.1-P	Field mustard	nucleus	26.17	40.19
Bra009219.1-P	Field mustard	nucleus	42.06	39.71
Bra005907.1-P	Field mustard	nucleus	39.25	39.13

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra040335	EnsemblPlants:Bra040335.1	EnsemblPlants:Bra040335.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HD-ZIP_N	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M4FGV7	PFAM:PF00046
PFAM:PF02183	PFAM:PF04618	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF514
SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000254408A	SEG:seg	:

Description

AT2G44910 (E=9e-065) ATHB4, ATHB-4 | ATHB4 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4); DNA binding / transcription factor

Coordinates

chrA04:-:18429882..18431708

Molecular Weight (calculated)

34813.0 Da

IEP (calculated)

8.423

GRAVY (calculated)

-0.641

Length

321 amino acids

Sequence
(BLAST)

001: MGESEDGLGL SLSLGLSQLK EPSLGLGLNL LPLRTSSSSF SHMHNHNNNH LQKKINHNSW PHQFHSSERN SDVGSLLRGL EVNRTPSATV VINLEEDLAG
101: VSSPNSNISS VSGNKRDLAA ARGDGGGDEN EAERASCSHG GGSDEEEGGN CEGTRKKLRL SKEQALVLED TFKEHSTLNP KQKLALAKQL NLRTRQVEVW
201: FQNRRARTKL KQTEVDCEYL KRCCDTLTEE NRRLHKEVAE LRALKLSPHL YMHMTPPTTL TMCPSCERVS ASSSSSAMAA AAPPSSITSG GGGRIPTVVG
301: RPSPQRPTPC AAISLQSRLA H

Best Arabidopsis Sequence Match ( AT2G44910.1 )
(BLAST)

001: MGERDDGLGL SLSLGNSQQK EPSLRLNLMP LTTSSSSSSF QHMHNQNNNS HPQKIHNISW THLFQSSGIK RTTAERNSDA GSFLRGFNVN RAQSSVAVVD
101: LEEEAAVVSS PNSAVSSLSG NKRDLAVARG GDENEAERAS CSRGGGSGGS DDEDGGNGDG SRKKLRLSKD QALVLEETFK EHSTLNPKQK LALAKQLNLR
201: ARQVEVWFQN RRARTKLKQT EVDCEYLKRC CDNLTEENRR LQKEVSELRA LKLSPHLYMH MTPPTTLTMC PSCERVSSSA ATVTAAPSTT TTPTVVGRPS
301: PQRLTPWTAI SLQQKSGR

Arabidopsis Description

ATHB-4Uncharacterized protein At2g44910 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV86]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.