Factsheet for Bra012663.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90473	Canola	nucleus	97.19	99.28
AT4G17460.1	Thale cress	nucleus	89.12	90.07
Bra026255.1-P	Field mustard	nucleus	85.61	89.05
Bra017489.1-P	Field mustard	nucleus	69.12	72.96
Bra024948.1-P	Field mustard	nucleus	70.18	72.46
VIT_15s0021g01880.t01	Wine grape	nucleus	51.23	51.23
Bra026666.1-P	Field mustard	nucleus	27.37	50.0
Bra040094.1-P	Field mustard	nucleus	49.82	49.82
Bra017451.1-P	Field mustard	nucleus	27.02	48.12
Bra007530.1-P	Field mustard	nucleus	51.23	46.95
Bra004874.1-P	Field mustard	nucleus	47.37	45.76
Bra040335.1-P	Field mustard	nucleus	50.88	45.17
Bra024888.1-P	Field mustard	nucleus	29.82	43.15
Bra007952.1-P	Field mustard	nucleus	29.12	40.49
Bra011786.1-P	Field mustard	nucleus	39.3	39.72
Bra010612.1-P	Field mustard	nucleus	36.84	38.89
Bra017853.1-P	Field mustard	nucleus	38.25	38.79
Bra016174.1-P	Field mustard	nucleus	28.07	38.28
Bra009219.1-P	Field mustard	nucleus	45.26	37.94
Bra005907.1-P	Field mustard	nucleus	42.81	37.89
Bra030200.1-P	Field mustard	nucleus	37.19	37.72

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra012663	EnsemblPlants:Bra012663.1	EnsemblPlants:Bra012663.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HD-ZIP_N	InterPro:HTH_motif
InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M4D853
PFAM:PF00046	PFAM:PF02183	PFAM:PF04618	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071
PANTHER:PTHR24326	PANTHER:PTHR24326:SF514	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000254099B
SEG:seg	:	:	:	:	:

Description

AT4G17460 (E=3e-105) HAT1 | HAT1; DNA binding / transcription factor

Coordinates

chrA03:+:22869734..22870838

Molecular Weight (calculated)

31863.8 Da

IEP (calculated)

7.944

GRAVY (calculated)

-0.678

Length

285 amino acids

Sequence
(BLAST)

001: MMMGKEDLSL SLSLGFAQTH HPHKLMNLKP TSSPISNLQM FPWNQTFVSS SGALLLQDHQ SQQLFTKINV NSLPVDLEEE TGVSSPNSTI SSNVSGKRRS
101: EREGTSGGAG DDLDVTLDRS SSRGTSEEEE EEYGGEACRK KLRLSKDQSA VLEDTFKEHN TLNPKQKLAL AKKLGLTARQ VEVWFQNRRA RTKLKQTEVD
201: CEYLKRCVEK LTEENIRLEK EAAELRALKL SPRLYGHMSP PTTLLMCPSC ERVAGPSNHN QRSVSLSPWL QMAHGSTFDV VHPRS

Best Arabidopsis Sequence Match ( AT4G17460.1 )
(BLAST)

001: MMMGKEDLGL SLSLGFAQNH PLQLNLKPTS SPMSNLQMFP WNQTLVSSSD QQKQQFLRKI DVNSLPTTVD LEEETGVSSP NSTISSTVSG KRRSTEREGT
101: SGGGCGDDLD ITLDRSSSRG TSDEEEDYGG ETCRKKLRLS KDQSAVLEDT FKEHNTLNPK QKLALAKKLG LTARQVEVWF QNRRARTKLK QTEVDCEYLK
201: RCVEKLTEEN RRLEKEAAEL RALKLSPRLY GQMSPPTTLL MCPSCERVAG PSSSNHNQRS VSLSPWLQMA HGSTFDVMRP RS

Arabidopsis Description

HAT1Homeobox-leucine zipper protein HAT1 [Source:UniProtKB/Swiss-Prot;Acc:P46600]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.