Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_00s0732g00010.t01 | |
| VIT_03s0038g04360.t01 | |
| VIT_13s0019g02260.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G47370.1 | VIT_03s0038g04360.t01 | AT1G22920.1 | 21798944 |
| AT5G47370.1 | VIT_13s0019g02260.t01 | AT2G39760.1 | 21798944 |
| AT5G47370.1 | VIT_00s0732g00010.t01 | AT4G37790.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0299g00100.t01 | Wine grape | nucleus | 65.96 | 63.3 |
| CDY41046 | Canola | nucleus | 41.4 | 62.43 |
| KRH40151 | Soybean | nucleus | 47.37 | 58.95 |
| CDY25971 | Canola | nucleus | 50.88 | 58.0 |
| KRH48783 | Soybean | nucleus | 63.51 | 57.1 |
| KRH66562 | Soybean | nucleus | 62.11 | 57.1 |
| Bra024948.1-P | Field mustard | nucleus | 54.39 | 56.16 |
| CDY64679 | Canola | nucleus | 54.39 | 56.16 |
| CDX77762 | Canola | nucleus | 53.68 | 55.84 |
| Solyc01g090460.2.1 | Tomato | nucleus | 55.79 | 55.59 |
| AT5G47370.1 | Thale cress | nucleus | 55.09 | 55.48 |
| PGSC0003DMT400066838 | Potato | nucleus | 55.79 | 55.21 |
| CDY70444 | Canola | nucleus | 52.98 | 54.91 |
| CDY67061 | Canola | nucleus | 52.98 | 54.91 |
| Bra017489.1-P | Field mustard | nucleus | 51.93 | 54.81 |
| Bra026255.1-P | Field mustard | nucleus | 52.63 | 54.74 |
| AT4G17460.1 | Thale cress | nucleus | 53.33 | 53.9 |
| KRH01102 | Soybean | nucleus | 54.39 | 53.45 |
| CDY09626 | Canola | nucleus | 51.93 | 52.67 |
| CDX90473 | Canola | nucleus | 51.23 | 52.33 |
| Bra012663.1-P | Field mustard | nucleus | 51.23 | 51.23 |
| VIT_00s0732g00010.t01 | Wine grape | nucleus | 42.46 | 42.76 |
| VIT_01s0011g04870.t01 | Wine grape | nucleus | 33.68 | 42.67 |
| VIT_18s0001g08410.t01 | Wine grape | nucleus | 40.35 | 42.59 |
| VIT_08s0007g06670.t01 | Wine grape | nucleus | 47.02 | 40.48 |
| VIT_13s0156g00260.t01 | Wine grape | nucleus | 50.53 | 40.22 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100264963 | wikigene:100264963 | MapMan:15.5.3.1 | ProteinID:CCB43874 | ProteinID:CCB43874.1 |
| ncoils:Coil | UniProt:F6GV91 | EMBL:FN594952 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0043565 | InterPro:HD-ZIP_N | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | InterPro:IPR001356 | EntrezGene:LOC100264963 | wikigene:LOC100264963 | InterPro:Leu_zip_homeo | PFAM:PF00046 |
| PFAM:PF02183 | PFAM:PF04618 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF514 |
| SMART:SM00340 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI000210A009 | ArrayExpress:VIT_15s0021g01880 | EnsemblPlantsGene:VIT_15s0021g01880 |
| EnsemblPlants:VIT_15s0021g01880.t01 | unigene:Vvi.21343 | RefSeq:XP_002272752 | RefSeq:XP_002272752.2 | RefSeq:XP_010661380.1 | SEG:seg |
Description
No Description!
Coordinates
chr15:-:12566190..12567827
Molecular Weight (calculated)
31793.6 Da
IEP (calculated)
7.477
GRAVY (calculated)
-0.773
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDKDDDLGL SLALKCPEAL PQRPLNLFVQ KKALCSDAFH ASETRAYLRG IDVNRAPTMA DCEDVGVSSP NSTISSISGK RNDRETNEEE NENENEIESS
101: EEDAGGTGDT VRKKLRLSKE QSAILEETFK EHNTLNPKQK LALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CENLTEENRR LQKEVQELRT
201: LKLSPQLYMH MNPPTTLTMC PSCERVAVAS ASSSAPSPSP ASNPLAAAPH FPLGPHQHRP MPIAGPWAGA ASMRHRPFDA HGTRS
101: EEDAGGTGDT VRKKLRLSKE QSAILEETFK EHNTLNPKQK LALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CENLTEENRR LQKEVQELRT
201: LKLSPQLYMH MNPPTTLTMC PSCERVAVAS ASSSAPSPSP ASNPLAAAPH FPLGPHQHRP MPIAGPWAGA ASMRHRPFDA HGTRS
001: MSERDDGLGL SLSLSLGFNQ KDPSSRLNPM PLASYASSSH MQHMQQSNYN HPQKIQNTWI NMFQSSERNS DMRSFLRGID VNRAPSTVVV DVEDEGAGVS
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH
Arabidopsis Description
HAT3Homeobox-leucine zipper protein HAT3 [Source:UniProtKB/Swiss-Prot;Acc:P46602]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.