Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90473 | Canola | nucleus | 93.24 | 93.91 |
| AT4G17460.1 | Thale cress | nucleus | 90.04 | 89.72 |
| CDY67061 | Canola | nucleus | 87.54 | 89.45 |
| CDY70444 | Canola | nucleus | 86.48 | 88.36 |
| CDY25971 | Canola | nucleus | 66.9 | 75.2 |
| CDY64679 | Canola | nucleus | 73.31 | 74.64 |
| CDX77762 | Canola | nucleus | 72.24 | 74.09 |
| CDY41046 | Canola | nucleus | 47.33 | 70.37 |
| CDX71814 | Canola | nucleus | 53.02 | 52.28 |
| VIT_15s0021g01880.t01 | Wine grape | nucleus | 52.67 | 51.93 |
| CDY41168 | Canola | nucleus | 53.02 | 50.51 |
| CDX74693 | Canola | nucleus | 50.53 | 48.14 |
| CDY40379 | Canola | nucleus | 32.03 | 45.92 |
| CDY37015 | Canola | nucleus | 52.31 | 45.79 |
| CDY27404 | Canola | nucleus | 51.6 | 45.45 |
| CDY63827 | Canola | nucleus | 31.32 | 44.9 |
| CDY17676 | Canola | nucleus | 31.32 | 44.67 |
| CDX77824 | Canola | nucleus | 31.67 | 44.5 |
| CDX81016 | Canola | nucleus | 40.21 | 43.46 |
| CDY41083 | Canola | nucleus | 19.57 | 42.64 |
| CDY64220 | Canola | nucleus | 36.3 | 42.32 |
| CDY03710 | Canola | nucleus | 30.25 | 41.46 |
| CDY67919 | Canola | nucleus | 40.21 | 40.07 |
| CDX69330 | Canola | nucleus | 39.86 | 39.72 |
| CDY60301 | Canola | nucleus | 37.72 | 39.26 |
| CDX72758 | Canola | nucleus | 29.18 | 39.23 |
| CDX70076 | Canola | nucleus | 46.62 | 38.53 |
| CDX98948 | Canola | nucleus | 46.26 | 38.35 |
| CDY55775 | Canola | nucleus | 43.77 | 38.2 |
| CDX96287 | Canola | nucleus | 24.2 | 37.57 |
| CDX78884 | Canola | nucleus | 28.83 | 32.14 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078F8H0 | UniProt:A0A078F8H0 | EnsemblPlants:CDY09626 | ProteinID:CDY09626 |
| ProteinID:CDY09626.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00031269001 | InterPro:HD-ZIP_N | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PFAM:PF04618 | PRINTS:PR00031 |
| ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF514 | SMART:SM00340 | SMART:SM00389 |
| SUPFAM:SSF46689 | UniParc:UPI0004EE5A9F | SEG:seg | : | : | : |
Description
BnaC07g34350DBnaC07g34350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8H0]
Coordinates
chrLK031998:-:80420..81612
Molecular Weight (calculated)
31554.1 Da
IEP (calculated)
8.036
GRAVY (calculated)
-0.740
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMGKEDLSL SLSLSLGFAQ THHPLKLNLN PTSSSISNLQ MFPWNQTFVS SSDHQNQQFF TKIDVNSLPS TVHLEEETGF SSPNSTISST VSGKRRSERE
101: GTSGGAGDDL DVTLDRSSSR ETSDEEEEHG GEASRKKLRL SKDQSAVLED TFKEHNTLNP KQKLALAKKL GLTARQVEVW FQNRRARTKL KQTEVDCEYL
201: KRCVEKLTEE NRRLEKEAVE LRALKLSPRL YGHMSPPTTL LMCPSCERVA GPSNHNQRSV SLSPWLQMAH GSTFDVVHPR S
101: GTSGGAGDDL DVTLDRSSSR ETSDEEEEHG GEASRKKLRL SKDQSAVLED TFKEHNTLNP KQKLALAKKL GLTARQVEVW FQNRRARTKL KQTEVDCEYL
201: KRCVEKLTEE NRRLEKEAVE LRALKLSPRL YGHMSPPTTL LMCPSCERVA GPSNHNQRSV SLSPWLQMAH GSTFDVVHPR S
001: MMMGKEDLGL SLSLGFAQNH PLQLNLKPTS SPMSNLQMFP WNQTLVSSSD QQKQQFLRKI DVNSLPTTVD LEEETGVSSP NSTISSTVSG KRRSTEREGT
101: SGGGCGDDLD ITLDRSSSRG TSDEEEDYGG ETCRKKLRLS KDQSAVLEDT FKEHNTLNPK QKLALAKKLG LTARQVEVWF QNRRARTKLK QTEVDCEYLK
201: RCVEKLTEEN RRLEKEAAEL RALKLSPRLY GQMSPPTTLL MCPSCERVAG PSSSNHNQRS VSLSPWLQMA HGSTFDVMRP RS
101: SGGGCGDDLD ITLDRSSSRG TSDEEEDYGG ETCRKKLRLS KDQSAVLEDT FKEHNTLNPK QKLALAKKLG LTARQVEVWF QNRRARTKLK QTEVDCEYLK
201: RCVEKLTEEN RRLEKEAAEL RALKLSPRLY GQMSPPTTLL MCPSCERVAG PSSSNHNQRS VSLSPWLQMA HGSTFDVMRP RS
Arabidopsis Description
HAT1Homeobox-leucine zipper protein HAT1 [Source:UniProtKB/Swiss-Prot;Acc:P46600]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.