Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37015 | Canola | nucleus | 97.18 | 96.57 |
| CDX74693 | Canola | nucleus | 70.85 | 76.61 |
| AT2G44910.1 | Thale cress | nucleus | 75.86 | 76.1 |
| CDX71814 | Canola | nucleus | 65.2 | 72.98 |
| CDY41168 | Canola | nucleus | 66.77 | 72.2 |
| KRH40151 | Soybean | nucleus | 42.32 | 58.95 |
| PGSC0003DMT400066838 | Potato | nucleus | 50.47 | 55.9 |
| Solyc01g090460.2.1 | Tomato | nucleus | 49.84 | 55.59 |
| CDY25971 | Canola | nucleus | 42.63 | 54.4 |
| CDY41046 | Canola | nucleus | 31.97 | 53.97 |
| KRH01102 | Soybean | nucleus | 48.9 | 53.79 |
| CDX77762 | Canola | nucleus | 45.77 | 53.28 |
| CDY64679 | Canola | nucleus | 46.08 | 53.26 |
| KRH66562 | Soybean | nucleus | 51.72 | 53.23 |
| KRH48783 | Soybean | nucleus | 52.66 | 53.0 |
| CDY70444 | Canola | nucleus | 45.14 | 52.36 |
| CDY67061 | Canola | nucleus | 45.14 | 52.36 |
| CDY09626 | Canola | nucleus | 45.45 | 51.6 |
| CDX90473 | Canola | nucleus | 44.51 | 50.9 |
| CDY40379 | Canola | nucleus | 29.15 | 47.45 |
| CDY63827 | Canola | nucleus | 28.53 | 46.43 |
| CDX77824 | Canola | nucleus | 28.84 | 46.0 |
| CDY17676 | Canola | nucleus | 28.21 | 45.69 |
| CDX81016 | Canola | nucleus | 36.68 | 45.0 |
| CDY03710 | Canola | nucleus | 28.53 | 44.39 |
| CDY64220 | Canola | nucleus | 32.6 | 43.15 |
| CDX96287 | Canola | nucleus | 23.51 | 41.44 |
| CDY67919 | Canola | nucleus | 36.36 | 41.13 |
| CDY60301 | Canola | nucleus | 34.8 | 41.11 |
| CDY41083 | Canola | nucleus | 16.61 | 41.09 |
| CDX69330 | Canola | nucleus | 36.05 | 40.78 |
| CDX72758 | Canola | nucleus | 26.65 | 40.67 |
| CDX98948 | Canola | nucleus | 42.01 | 39.53 |
| CDX70076 | Canola | nucleus | 42.01 | 39.41 |
| CDY55775 | Canola | nucleus | 39.5 | 39.13 |
| CDX78884 | Canola | nucleus | 23.82 | 30.16 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078GQC2 | UniProt:A0A078GQC2 | EnsemblPlants:CDY27404 | ProteinID:CDY27404 |
| ProteinID:CDY27404.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00037358001 | InterPro:HD-ZIP_N | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PFAM:PF04618 | ScanProsite:PS00027 | PFscan:PS50071 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF514 | SMART:SM00340 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EF1116 |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g50010DBnaC04g50010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQC2]
Coordinates
chrLK032203:+:535739..537601
Molecular Weight (calculated)
34739.9 Da
IEP (calculated)
8.590
GRAVY (calculated)
-0.672
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MGESEDGLGL SLSLGLSQLK EPSLGLGLNL LPLRTSSSFS HMHNHNNNHL QKKIYHNSWP HQFQSSERNS DVGSLLRGLE VNRTPSATVV INLEEDAAGV
101: SSPNSNVSSV SGNKRDLAAA RGDGGGDENE AERASCSHGG GSDEEERGNC EGTRKKLRLS KEQALVLEET FKEHSTLNPK QKLALAKQLN LRTRQVEVWF
201: QNRRARTKLK QTEVDCEYLK RCCDTLTEEN RRLHKEVSEL RALKLSPHLY MHMTPPTTLT MCPSCERVSA SSSSSAMAAA APPSSTASGG GRIPTVVGRP
301: SPQRPTPCAA ISLQSRLAH
101: SSPNSNVSSV SGNKRDLAAA RGDGGGDENE AERASCSHGG GSDEEERGNC EGTRKKLRLS KEQALVLEET FKEHSTLNPK QKLALAKQLN LRTRQVEVWF
201: QNRRARTKLK QTEVDCEYLK RCCDTLTEEN RRLHKEVSEL RALKLSPHLY MHMTPPTTLT MCPSCERVSA SSSSSAMAAA APPSSTASGG GRIPTVVGRP
301: SPQRPTPCAA ISLQSRLAH
001: MGERDDGLGL SLSLGNSQQK EPSLRLNLMP LTTSSSSSSF QHMHNQNNNS HPQKIHNISW THLFQSSGIK RTTAERNSDA GSFLRGFNVN RAQSSVAVVD
101: LEEEAAVVSS PNSAVSSLSG NKRDLAVARG GDENEAERAS CSRGGGSGGS DDEDGGNGDG SRKKLRLSKD QALVLEETFK EHSTLNPKQK LALAKQLNLR
201: ARQVEVWFQN RRARTKLKQT EVDCEYLKRC CDNLTEENRR LQKEVSELRA LKLSPHLYMH MTPPTTLTMC PSCERVSSSA ATVTAAPSTT TTPTVVGRPS
301: PQRLTPWTAI SLQQKSGR
101: LEEEAAVVSS PNSAVSSLSG NKRDLAVARG GDENEAERAS CSRGGGSGGS DDEDGGNGDG SRKKLRLSKD QALVLEETFK EHSTLNPKQK LALAKQLNLR
201: ARQVEVWFQN RRARTKLKQT EVDCEYLKRC CDNLTEENRR LQKEVSELRA LKLSPHLYMH MTPPTTLTMC PSCERVSSSA ATVTAAPSTT TTPTVVGRPS
301: PQRLTPWTAI SLQQKSGR
Arabidopsis Description
ATHB-4Uncharacterized protein At2g44910 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV86]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.