Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17676 | Canola | nucleus | 96.0 | 97.46 |
| CDY40379 | Canola | nucleus | 90.0 | 91.84 |
| CDY63827 | Canola | nucleus | 89.0 | 90.82 |
| CDY41083 | Canola | nucleus | 52.5 | 81.4 |
| KRH50371 | Soybean | nucleus | 68.0 | 63.85 |
| KRG89300 | Soybean | nucleus | 68.0 | 62.1 |
| GSMUA_Achr4P06480_001 | Banana | nucleus | 51.0 | 61.45 |
| VIT_01s0011g04870.t01 | Wine grape | nucleus | 67.5 | 60.0 |
| Solyc05g008050.1.1 | Tomato | nucleus | 62.0 | 59.33 |
| GSMUA_AchrUn_... | Banana | nucleus | 62.0 | 56.88 |
| PGSC0003DMT400078329 | Potato | nucleus | 60.5 | 56.28 |
| TraesCS3A01G231600.1 | Wheat | nucleus | 61.0 | 54.95 |
| TraesCS3B01G260800.1 | Wheat | nucleus | 61.0 | 54.95 |
| TraesCS3D01G221800.1 | Wheat | nucleus | 60.5 | 54.5 |
| GSMUA_Achr4P13440_001 | Banana | nucleus | 61.5 | 54.19 |
| Zm00001d044081_P001 | Maize | nucleus | 60.0 | 53.33 |
| Os01t0643600-00 | Rice | nucleus | 60.5 | 52.84 |
| EES03343 | Sorghum | nucleus | 59.0 | 51.3 |
| CDY03710 | Canola | nucleus | 52.0 | 50.73 |
| CDX96287 | Canola | nucleus | 45.5 | 50.28 |
| CDX72758 | Canola | nucleus | 52.5 | 50.24 |
| CDY41046 | Canola | nucleus | 35.5 | 37.57 |
| CDY25971 | Canola | nucleus | 42.0 | 33.6 |
| CDX81016 | Canola | nucleus | 43.0 | 33.08 |
| CDY67061 | Canola | nucleus | 45.0 | 32.73 |
| CDY70444 | Canola | nucleus | 44.5 | 32.36 |
| CDX71814 | Canola | nucleus | 46.0 | 32.28 |
| CDY09626 | Canola | nucleus | 44.5 | 31.67 |
| CDY41168 | Canola | nucleus | 46.0 | 31.19 |
| CDX90473 | Canola | nucleus | 43.5 | 31.18 |
| CDY64679 | Canola | nucleus | 43.0 | 31.16 |
| CDX77762 | Canola | nucleus | 42.5 | 31.02 |
| CDX74693 | Canola | nucleus | 45.0 | 30.51 |
| CDY64220 | Canola | nucleus | 35.0 | 29.05 |
| CDY37015 | Canola | nucleus | 46.5 | 28.97 |
| CDY27404 | Canola | nucleus | 46.0 | 28.84 |
| CDY67919 | Canola | nucleus | 39.5 | 28.01 |
| CDX69330 | Canola | nucleus | 39.5 | 28.01 |
| CDY55775 | Canola | nucleus | 44.5 | 27.64 |
| CDY60301 | Canola | nucleus | 37.0 | 27.41 |
| CDX70076 | Canola | nucleus | 46.5 | 27.35 |
| CDX98948 | Canola | nucleus | 46.0 | 27.14 |
| CDX78884 | Canola | nucleus | 26.5 | 21.03 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078CP32 | EnsemblPlants:CDX77824 | ProteinID:CDX77824 | ProteinID:CDX77824.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00128889001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo |
| PFAM:PF00046 | PFAM:PF02183 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF114 |
| SMART:SM00340 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EE0D51 | SEG:seg | : |
Description
BnaC07g20780D
Coordinates
chrLK031812:-:2129420..2133881
Molecular Weight (calculated)
22480.6 Da
IEP (calculated)
8.520
GRAVY (calculated)
-0.844
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MAILPENSSH LDLTISVPGF SSSPPSDEGS GGGREQLKLD MNQLPSSSED NEELSHGGSA PPRKKLRLTR EQSRLLEDSF RQNHTLNPKQ KEALAKHLML
101: RPRQIEVWFQ NRRARSKLKQ TEMECEYLKR WFGSLTEQNH RLHREVEELR AMNVGPTTVT SASSLTMCPR CERVTTAASA ASPSLAIPSQ KTLPPQESEH
101: RPRQIEVWFQ NRRARSKLKQ TEMECEYLKR WFGSLTEQNH RLHREVEELR AMNVGPTTVT SASSLTMCPR CERVTTAASA ASPSLAIPSQ KTLPPQESEH
001: MIKLLFTYIC TYTYKLYALY HMDYACVCMY KYKGIVTLQV CLFYIKLRVF LSNFTFSSSI LALKNPNNSL IKIMAILPEN SSNLDLTISV PGFSSSPLSD
101: EGSGGGRDQL RLDMNRLPSS EDGDDEEFSH DDGSAPPRKK LRLTREQSRL LEDSFRQNHT LNPKQKEVLA KHLMLRPRQI EVWFQNRRAR SKLKQTEMEC
201: EYLKRWFGSL TEENHRLHRE VEELRAMKVG PTTVNSASSL TMCPRCERVT PAASPSRAVV PVPAKKTFPP QERDR
101: EGSGGGRDQL RLDMNRLPSS EDGDDEEFSH DDGSAPPRKK LRLTREQSRL LEDSFRQNHT LNPKQKEVLA KHLMLRPRQI EVWFQNRRAR SKLKQTEMEC
201: EYLKRWFGSL TEENHRLHRE VEELRAMKVG PTTVNSASSL TMCPRCERVT PAASPSRAVV PVPAKKTFPP QERDR
Arabidopsis Description
ATHB-17Homeobox-leucine zipper protein ATHB-17 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9N6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.