Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G231600.1 | Wheat | nucleus | 98.2 | 98.2 |
| TraesCS3B01G260800.1 | Wheat | nucleus | 97.75 | 97.75 |
| Os01t0643600-00 | Rice | nucleus | 90.09 | 87.34 |
| Zm00001d044081_P001 | Maize | nucleus | 86.04 | 84.89 |
| EES03343 | Sorghum | nucleus | 84.68 | 81.74 |
| GSMUA_Achr4P06480_001 | Banana | nucleus | 56.31 | 75.3 |
| GSMUA_AchrUn_... | Banana | nucleus | 72.97 | 74.31 |
| GSMUA_Achr4P13440_001 | Banana | nucleus | 72.52 | 70.93 |
| Bra026666.1-P | Field mustard | nucleus | 45.5 | 64.74 |
| KRH50371 | Soybean | nucleus | 60.36 | 62.91 |
| VIT_01s0011g04870.t01 | Wine grape | nucleus | 62.61 | 61.78 |
| KRG89300 | Soybean | nucleus | 60.81 | 61.64 |
| CDX77824 | Canola | nucleus | 54.5 | 60.5 |
| CDY40379 | Canola | nucleus | 53.15 | 60.2 |
| CDY17676 | Canola | nucleus | 53.15 | 59.9 |
| Bra024888.1-P | Field mustard | nucleus | 52.7 | 59.39 |
| CDY63827 | Canola | nucleus | 52.25 | 59.18 |
| Bra017451.1-P | Field mustard | nucleus | 42.34 | 58.75 |
| Solyc05g008050.1.1 | Tomato | nucleus | 54.95 | 58.37 |
| PGSC0003DMT400078329 | Potato | nucleus | 55.41 | 57.21 |
| AT1G70920.1 | Thale cress | nucleus | 48.65 | 52.43 |
| CDY41083 | Canola | nucleus | 30.18 | 51.94 |
| CDY03710 | Canola | nucleus | 47.75 | 51.71 |
| Bra007952.1-P | Field mustard | nucleus | 47.75 | 51.71 |
| Bra016174.1-P | Field mustard | nucleus | 46.4 | 49.28 |
| CDX96287 | Canola | nucleus | 40.09 | 49.17 |
| CDX72758 | Canola | nucleus | 45.5 | 48.33 |
| AT2G01430.1 | Thale cress | plasma membrane | 54.05 | 43.64 |
| TraesCS2D01G412900.1 | Wheat | nucleus | 39.19 | 37.83 |
| TraesCS4D01G236600.1 | Wheat | nucleus | 44.59 | 36.13 |
| TraesCS3D01G009700.1 | Wheat | nucleus | 36.49 | 35.84 |
| TraesCS7D01G417700.1 | Wheat | nucleus | 34.23 | 34.23 |
| TraesCS6D01G110400.1 | Wheat | nucleus | 28.83 | 33.33 |
| TraesCS7D01G079000.1 | Wheat | nucleus | 38.29 | 31.6 |
| TraesCS7D01G078900.1 | Wheat | nucleus | 38.29 | 30.36 |
| TraesCS7D01G078800.1 | Wheat | nucleus | 39.64 | 29.63 |
| TraesCS5D01G235300.1 | Wheat | nucleus | 44.59 | 29.2 |
| TraesCS6D01G110600.1 | Wheat | nucleus | 28.83 | 28.44 |
| TraesCS1D01G379700.1 | Wheat | nucleus | 37.84 | 27.63 |
| TraesCS1D01G220900.1 | Wheat | nucleus | 40.54 | 27.61 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | ScanProsite:PS00027 | PFscan:PS50071 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF114 | SMART:SM00340 | SMART:SM00389 | SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS3D01G221800 |
| EnsemblPlants:TraesCS3D01G221800.1 | TIGR:cd00086 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3D:+:302265801..302269312
Molecular Weight (calculated)
24777.7 Da
IEP (calculated)
9.451
GRAVY (calculated)
-0.746
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MGATSPSGLE LTMAVPGLSS SSGSEGFVCN NIINNNGGGN MRDLDMNQPA SGGEEEDFLM GGLEEDEEER GAGGPHRPKK LRLSKEQSRL LEESFRLNHT
101: LSPKQKEALA IKLKLRPRQV EVWFQNRRAR TKLKHTEMEC EYLKRCFGSL TEENRRLQRE VEELRAMRMA PPTVLSPHTR QPLPASALTM CPRCERVTAA
201: TGPRITRPAA SPFHPRRPSA AF
101: LSPKQKEALA IKLKLRPRQV EVWFQNRRAR TKLKHTEMEC EYLKRCFGSL TEENRRLQRE VEELRAMRMA PPTVLSPHTR QPLPASALTM CPRCERVTAA
201: TGPRITRPAA SPFHPRRPSA AF
001: MIKLLFTYIC TYTYKLYALY HMDYACVCMY KYKGIVTLQV CLFYIKLRVF LSNFTFSSSI LALKNPNNSL IKIMAILPEN SSNLDLTISV PGFSSSPLSD
101: EGSGGGRDQL RLDMNRLPSS EDGDDEEFSH DDGSAPPRKK LRLTREQSRL LEDSFRQNHT LNPKQKEVLA KHLMLRPRQI EVWFQNRRAR SKLKQTEMEC
201: EYLKRWFGSL TEENHRLHRE VEELRAMKVG PTTVNSASSL TMCPRCERVT PAASPSRAVV PVPAKKTFPP QERDR
101: EGSGGGRDQL RLDMNRLPSS EDGDDEEFSH DDGSAPPRKK LRLTREQSRL LEDSFRQNHT LNPKQKEVLA KHLMLRPRQI EVWFQNRRAR SKLKQTEMEC
201: EYLKRWFGSL TEENHRLHRE VEELRAMKVG PTTVNSASSL TMCPRCERVT PAASPSRAVV PVPAKKTFPP QERDR
Arabidopsis Description
ATHB-17Homeobox-leucine zipper protein ATHB-17 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9N6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.