Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G505300.1 | Wheat | nucleus | 93.08 | 93.8 |
| TraesCS3B01G560300.1 | Wheat | nucleus | 89.62 | 91.73 |
| EES00097 | Sorghum | nucleus | 50.38 | 44.26 |
| Zm00001d050143_P001 | Maize | nucleus | 45.38 | 41.7 |
| TraesCS7A01G276700.1 | Wheat | nucleus | 19.23 | 33.56 |
| TraesCS5A01G361000.1 | Wheat | nucleus | 20.38 | 33.33 |
| TraesCS2A01G183800.1 | Wheat | nucleus | 20.0 | 29.71 |
| TraesCS5A01G360700.1 | Wheat | nucleus | 18.08 | 29.56 |
| TraesCS5A01G360600.1 | Wheat | nucleus | 18.08 | 27.33 |
| GSMUA_Achr2P05140_001 | Banana | nucleus | 25.77 | 26.48 |
| Solyc06g068390.1.1 | Tomato | nucleus | 17.31 | 25.42 |
| KRH44531 | Soybean | nucleus | 21.54 | 24.89 |
| TraesCS6A01G145900.1 | Wheat | nucleus | 17.69 | 24.86 |
| VIT_09s0002g09080.t01 | Wine grape | nucleus | 25.38 | 24.72 |
| KRH23633 | Soybean | nucleus | 21.54 | 24.56 |
| TraesCS5A01G071900.1 | Wheat | nucleus | 17.31 | 23.94 |
| Bra035157.1-P | Field mustard | nucleus | 19.62 | 23.83 |
| GSMUA_Achr6P01990_001 | Banana | nucleus | 22.69 | 23.79 |
| AT1G80730.1 | Thale cress | nucleus | 20.77 | 23.68 |
| CDY39947 | Canola | nucleus | 20.0 | 23.64 |
| CDX79357 | Canola | nucleus | 20.38 | 23.45 |
| PGSC0003DMT400073330 | Potato | nucleus | 18.08 | 23.38 |
| CDX87338 | Canola | nucleus | 20.0 | 23.21 |
| Bra003582.1-P | Field mustard | nucleus | 19.23 | 23.15 |
| CDX97070 | Canola | nucleus | 21.54 | 23.14 |
| TraesCS4A01G073200.1 | Wheat | nucleus | 21.54 | 23.14 |
| Bra008445.1-P | Field mustard | nucleus | 19.23 | 23.04 |
| KRH61695 | Soybean | nucleus | 24.62 | 22.78 |
| Bra009000.1-P | Field mustard | nucleus | 21.15 | 22.73 |
| CDX69795 | Canola | nucleus | 21.15 | 22.73 |
| CDX67963 | Canola | nucleus | 19.62 | 22.57 |
| CDY66132 | Canola | nucleus | 19.62 | 22.37 |
| KRH09666 | Soybean | nucleus | 22.69 | 22.18 |
| GSMUA_Achr5P22810_001 | Banana | nucleus | 21.92 | 22.18 |
| GSMUA_Achr8P29430_001 | Banana | nucleus | 21.92 | 22.18 |
| CDY71759 | Canola | nucleus | 19.23 | 22.03 |
| KRH52363 | Soybean | nucleus | 24.62 | 21.84 |
| KRH15782 | Soybean | nucleus | 25.38 | 21.15 |
| AT5G25160.1 | Thale cress | nucleus | 18.85 | 20.85 |
| KRH47378 | Soybean | nucleus | 20.0 | 19.92 |
| KRH05270 | Soybean | nucleus | 25.0 | 19.82 |
| AT5G10970.1 | Thale cress | nucleus | 20.38 | 19.49 |
| CDY05377 | Canola | nucleus | 18.46 | 19.35 |
| CDY19813 | Canola | nucleus | 18.85 | 19.29 |
| Bra036535.1-P | Field mustard | nucleus | 18.85 | 19.29 |
| CDY05474 | Canola | nucleus | 18.08 | 18.95 |
| Bra020486.1-P | Field mustard | nucleus | 18.08 | 18.95 |
| Bra009822.1-P | Field mustard | nucleus | 18.46 | 18.9 |
| CDX88160 | Canola | nucleus | 17.69 | 18.7 |
| CDX87097 | Canola | plastid | 7.31 | 13.67 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G497500.1 | EnsemblPlantsGene:TraesCS3A01G497500 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF311 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | MapMan:15.5.15 | : | : |
Description
No Description!
Coordinates
chr3A:-:723565528..723566310
Molecular Weight (calculated)
27046.6 Da
IEP (calculated)
8.624
GRAVY (calculated)
-0.492
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MGPSSRTASM EGVKGEGEGE EAEEVQPANE GLSAPSLELN LVGALALVEN AAAEEKGKAE SVVAAGPSVE PKAAVVVAGG ENRRTFKCNY CQRKFYTSQA
101: LGGHQNAHKR ERSIAKRAAA GRGGDPAAGL YGAADHHLRY ATAWPYSAAG RSFLARGSPT PPFYGMQMHH PGWGAAPQPY LAGLARLASA HRPMYRPEAY
201: GYGASSRAPI SAFPETAPTV TGISRAGASG SGSDNGGDHS INELKKKEET ASNIDLTLKL
101: LGGHQNAHKR ERSIAKRAAA GRGGDPAAGL YGAADHHLRY ATAWPYSAAG RSFLARGSPT PPFYGMQMHH PGWGAAPQPY LAGLARLASA HRPMYRPEAY
201: GYGASSRAPI SAFPETAPTV TGISRAGASG SGSDNGGDHS INELKKKEET ASNIDLTLKL
001: MRPILDLEIE ASSGSSSSQV ASNLSPVGED YKPISLNLSL SFNNNNNNNL DLESSSLTLP LSSTSESSNP EQQQQQQPSV SKRVFSCNYC QRKFYSSQAL
101: GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
201: PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME SSLPDLTLKL
101: GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
201: PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME SSLPDLTLKL
Arabidopsis Description
ZFP4Zinc finger protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q39263]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.