Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87338 | Canola | nucleus | 96.82 | 95.09 |
| CDY66132 | Canola | nucleus | 84.55 | 81.58 |
| CDX67963 | Canola | nucleus | 81.82 | 79.65 |
| AT1G80730.1 | Thale cress | nucleus | 82.27 | 79.39 |
| CDY71759 | Canola | nucleus | 81.82 | 79.3 |
| CDX79357 | Canola | nucleus | 80.45 | 78.32 |
| KRH23633 | Soybean | nucleus | 39.09 | 37.72 |
| VIT_09s0002g09080.t01 | Wine grape | nucleus | 45.45 | 37.45 |
| CDY60000 | Canola | nucleus, plastid | 24.09 | 35.33 |
| KRH44531 | Soybean | nucleus | 35.91 | 35.11 |
| CDY05377 | Canola | nucleus | 39.09 | 34.68 |
| CDY05474 | Canola | nucleus | 39.09 | 34.68 |
| CDY11864 | Canola | nucleus, plastid | 23.64 | 34.67 |
| CDY58140 | Canola | nucleus, plastid | 23.64 | 34.67 |
| PGSC0003DMT400073330 | Potato | nucleus | 31.36 | 34.33 |
| Solyc06g068390.1.1 | Tomato | nucleus | 27.27 | 33.9 |
| KRH09666 | Soybean | nucleus | 40.91 | 33.83 |
| KRH61695 | Soybean | nucleus | 43.18 | 33.81 |
| CDX88160 | Canola | nucleus | 37.27 | 33.33 |
| CDX69795 | Canola | nucleus | 36.36 | 33.06 |
| CDX97070 | Canola | nucleus | 36.36 | 33.06 |
| KRH47378 | Soybean | nucleus | 36.82 | 31.03 |
| CDY19813 | Canola | nucleus | 35.45 | 30.71 |
| GSMUA_Achr2P05140_001 | Banana | nucleus | 35.0 | 30.43 |
| KRH52363 | Soybean | nucleus | 40.45 | 30.38 |
| GSMUA_Achr5P22810_001 | Banana | nucleus | 34.55 | 29.57 |
| TraesCS6D01G135200.1 | Wheat | nucleus | 22.73 | 28.9 |
| GSMUA_Achr8P29430_001 | Banana | nucleus | 33.18 | 28.4 |
| TraesCS6A01G145900.1 | Wheat | nucleus | 23.64 | 28.11 |
| CDX87097 | Canola | plastid | 17.73 | 28.06 |
| HORVU0Hr1G015760.1 | Barley | nucleus | 22.27 | 28.0 |
| KRH15782 | Soybean | nucleus | 39.55 | 27.88 |
| CDY03873 | Canola | nucleus | 26.82 | 27.7 |
| GSMUA_Achr6P01990_001 | Banana | nucleus | 30.91 | 27.42 |
| CDY72110 | Canola | nucleus | 26.36 | 27.23 |
| CDY69498 | Canola | nucleus | 25.91 | 27.01 |
| CDY07483 | Canola | nucleus | 30.0 | 26.83 |
| CDY24418 | Canola | nucleus | 25.45 | 26.54 |
| KRH05270 | Soybean | nucleus | 39.55 | 26.52 |
| CDY65468 | Canola | nucleus | 31.36 | 26.34 |
| Os02t0182300-00 | Rice | cytosol, mitochondrion, peroxisome | 23.18 | 26.29 |
| CDY50321 | Canola | nucleus | 31.82 | 26.22 |
| OQU84499 | Sorghum | nucleus | 23.18 | 26.15 |
| TraesCS5D01G354900.1 | Wheat | nucleus | 23.18 | 22.97 |
| Zm00001d015525_P001 | Maize | nucleus | 17.27 | 21.71 |
| TraesCS3B01G560300.1 | Wheat | nucleus | 23.64 | 20.47 |
| TraesCS5D01G355400.1 | Wheat | nucleus | 22.27 | 20.25 |
| TraesCS3D01G505300.1 | Wheat | nucleus | 23.64 | 20.16 |
| TraesCS3A01G497500.1 | Wheat | nucleus | 23.64 | 20.0 |
| CDY39248 | Canola | cytosol | 14.55 | 19.75 |
| EES00097 | Sorghum | nucleus | 25.0 | 18.58 |
| Zm00001d050143_P001 | Maize | nucleus | 22.73 | 17.67 |
Protein Annotations
| EnsemblPlants:CDY39947 | EnsemblPlantsGene:GSBRNA2T00068825001 | Gene3D:3.30.160.60 | GO:A0A078HQ39 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF258 |
| PFscan:PS50157 | ProteinID:CDY39947 | ProteinID:CDY39947.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 |
| UniParc:UPI0004EE6E2F | UniProt:A0A078HQ39 | MapMan:15.5.15 | : | : | : |
Description
BnaC06g40250DBnaC06g40250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQ39]
Coordinates
chrLK032461:+:42517..43179
Molecular Weight (calculated)
24763.2 Da
IEP (calculated)
10.155
GRAVY (calculated)
-0.774
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSIKGDQE MLKIKKRCYQ DLELGLTLLP RGTTSSELNL IDSFKTSSSS TSHHHPNRHE HLEDPRTFSC NYCQRKFYSS QALGGHQNAH KRERTLAKRG
101: HYYKMSLSSS SSSSPSSAFA FGHGSVSRFA SMASLPLHGS PSNRSTLGIH AHSTIHNPYL GRQTASLSHV FKQSVHQKPD MGKVMPEKFH IEVANSNIEY
201: LKSKQEDHNQ FKKIDLTLKL
101: HYYKMSLSSS SSSSPSSAFA FGHGSVSRFA SMASLPLHGS PSNRSTLGIH AHSTIHNPYL GRQTASLSHV FKQSVHQKPD MGKVMPEKFH IEVANSNIEY
201: LKSKQEDHNQ FKKIDLTLKL
001: MEPSIKGDQE MLKIKKQGHQ DLELGLTLLS RGTATSSELN LIDSFKTSSS STSHHQHQQE QLADPRVFSC NYCQRKFYSS QALGGHQNAH KRERTLAKRG
101: QYYKMTLSSL PSSAFAFGHG SVSRFASMAS LPLHGSVNNR STLGIQAHST IHKPSFLGRQ TTSLSHVFKQ SIHQKPTIGK MLPEKFHLEV AGNNNSNMVA
201: AKLERIGHFK SNQEDHNQFK KIDLTLKL
101: QYYKMTLSSL PSSAFAFGHG SVSRFASMAS LPLHGSVNNR STLGIQAHST IHKPSFLGRQ TTSLSHVFKQ SIHQKPTIGK MLPEKFHLEV AGNNNSNMVA
201: AKLERIGHFK SNQEDHNQFK KIDLTLKL
Arabidopsis Description
ZFP1At1g80730 [Source:UniProtKB/TrEMBL;Acc:Q0V814]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.