Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003582.1-P | Field mustard | nucleus | 92.48 | 96.76 |
| CDX67963 | Canola | nucleus | 96.46 | 96.46 |
| CDY66132 | Canola | nucleus | 81.42 | 80.7 |
| CDY39947 | Canola | nucleus | 78.32 | 80.45 |
| AT1G80730.1 | Thale cress | nucleus | 80.97 | 80.26 |
| CDX87338 | Canola | nucleus | 78.32 | 79.02 |
| CDY71759 | Canola | nucleus | 78.76 | 78.41 |
| VIT_09s0002g09080.t01 | Wine grape | nucleus | 45.13 | 38.2 |
| CDY11864 | Canola | nucleus, plastid | 23.45 | 35.33 |
| CDY60000 | Canola | nucleus, plastid | 23.45 | 35.33 |
| KRH23633 | Soybean | nucleus | 35.4 | 35.09 |
| CDY05474 | Canola | nucleus | 38.05 | 34.68 |
| KRH44531 | Soybean | nucleus | 34.51 | 34.67 |
| CDY58140 | Canola | nucleus, plastid | 23.01 | 34.67 |
| CDY05377 | Canola | nucleus | 37.61 | 34.27 |
| CDX88160 | Canola | nucleus | 37.17 | 34.15 |
| PGSC0003DMT400073330 | Potato | nucleus | 30.09 | 33.83 |
| CDX97070 | Canola | nucleus | 35.84 | 33.47 |
| CDX69795 | Canola | nucleus | 35.84 | 33.47 |
| Solyc06g068390.1.1 | Tomato | nucleus | 26.11 | 33.33 |
| CDY19813 | Canola | nucleus | 37.17 | 33.07 |
| KRH61695 | Soybean | nucleus | 40.27 | 32.38 |
| GSMUA_Achr2P05140_001 | Banana | nucleus | 35.4 | 31.62 |
| KRH09666 | Soybean | nucleus | 36.28 | 30.83 |
| CDX87097 | Canola | plastid | 18.58 | 30.22 |
| CDY03873 | Canola | nucleus | 27.88 | 29.58 |
| GSMUA_Achr5P22810_001 | Banana | nucleus | 33.63 | 29.57 |
| KRH47378 | Soybean | nucleus | 34.07 | 29.5 |
| GSMUA_Achr6P01990_001 | Banana | nucleus | 32.3 | 29.44 |
| KRH52363 | Soybean | nucleus | 38.05 | 29.35 |
| GSMUA_Achr8P29430_001 | Banana | nucleus | 33.19 | 29.18 |
| CDY72110 | Canola | nucleus | 26.99 | 28.64 |
| KRH15782 | Soybean | nucleus | 39.38 | 28.53 |
| CDY69498 | Canola | nucleus | 26.55 | 28.44 |
| CDY24418 | Canola | nucleus | 26.11 | 27.96 |
| TraesCS6D01G135200.1 | Wheat | nucleus | 20.8 | 27.17 |
| KRH05270 | Soybean | nucleus | 38.94 | 26.83 |
| CDY07483 | Canola | nucleus | 29.2 | 26.83 |
| HORVU0Hr1G015760.1 | Barley | nucleus | 20.35 | 26.29 |
| CDY65468 | Canola | nucleus | 30.09 | 25.95 |
| TraesCS6A01G145900.1 | Wheat | nucleus | 21.24 | 25.95 |
| CDY50321 | Canola | nucleus | 30.53 | 25.84 |
| OQU84499 | Sorghum | nucleus | 22.12 | 25.64 |
| Os02t0182300-00 | Rice | cytosol, mitochondrion, peroxisome | 20.8 | 24.23 |
| TraesCS5D01G354900.1 | Wheat | nucleus | 23.45 | 23.87 |
| TraesCS5D01G355400.1 | Wheat | nucleus | 24.34 | 22.73 |
| Zm00001d015525_P001 | Maize | nucleus | 17.26 | 22.29 |
| TraesCS3B01G560300.1 | Wheat | nucleus | 23.45 | 20.87 |
| TraesCS3D01G505300.1 | Wheat | nucleus | 23.45 | 20.54 |
| TraesCS3A01G497500.1 | Wheat | nucleus | 23.45 | 20.38 |
| CDY39248 | Canola | cytosol | 14.16 | 19.75 |
| EES00097 | Sorghum | nucleus | 25.22 | 19.26 |
| Zm00001d050143_P001 | Maize | nucleus | 23.01 | 18.37 |
Protein Annotations
| EnsemblPlants:CDX79357 | EnsemblPlantsGene:GSBRNA2T00132050001 | Gene3D:3.30.160.60 | GO:A0A078CRK2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF258 |
| PFscan:PS50157 | ProteinID:CDX79357 | ProteinID:CDX79357.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 |
| UniParc:UPI0004EF189D | MapMan:15.5.15 | : | : | : | : |
Description
BnaC06g19460D
Coordinates
chrLK031817:+:1594694..1595374
Molecular Weight (calculated)
25078.7 Da
IEP (calculated)
10.276
GRAVY (calculated)
-0.691
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSFKGDQE MLKIKKQGHQ DLELGLNLLP SATTSSELNL LDSFKTSSSS TSHHHGNHQE HLENPRVFSC NYCKRKFYSS QALGGHQNAH KRERTLAKRG
101: QYYKMSLSSS SPSSAFAFGH GLVSRFASLA SLQLHGSANN RSTLGIQAHS ASHNPLLGRQ TASLSQVFKH TIHQKPGTGK MLPEKFHLEV ASSNNTIAPK
201: LEMIGHFKSK EEDNNEFKKI DLTLKL
101: QYYKMSLSSS SPSSAFAFGH GLVSRFASLA SLQLHGSANN RSTLGIQAHS ASHNPLLGRQ TASLSQVFKH TIHQKPGTGK MLPEKFHLEV ASSNNTIAPK
201: LEMIGHFKSK EEDNNEFKKI DLTLKL
001: MEPSIKGDQE MLKIKKQGHQ DLELGLTLLS RGTATSSELN LIDSFKTSSS STSHHQHQQE QLADPRVFSC NYCQRKFYSS QALGGHQNAH KRERTLAKRG
101: QYYKMTLSSL PSSAFAFGHG SVSRFASMAS LPLHGSVNNR STLGIQAHST IHKPSFLGRQ TTSLSHVFKQ SIHQKPTIGK MLPEKFHLEV AGNNNSNMVA
201: AKLERIGHFK SNQEDHNQFK KIDLTLKL
101: QYYKMTLSSL PSSAFAFGHG SVSRFASMAS LPLHGSVNNR STLGIQAHST IHKPSFLGRQ TTSLSHVFKQ SIHQKPTIGK MLPEKFHLEV AGNNNSNMVA
201: AKLERIGHFK SNQEDHNQFK KIDLTLKL
Arabidopsis Description
ZFP1At1g80730 [Source:UniProtKB/TrEMBL;Acc:Q0V814]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.