Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72110 | Canola | nucleus | 95.77 | 95.77 |
| Bra012496.1-P | Field mustard | nucleus | 94.37 | 94.37 |
| CDY24418 | Canola | nucleus | 86.39 | 87.2 |
| CDY69498 | Canola | nucleus | 85.92 | 86.73 |
| AT1G24625.1 | Thale cress | nucleus | 81.22 | 82.78 |
| CDY07483 | Canola | nucleus | 38.97 | 33.74 |
| CDY65468 | Canola | nucleus | 39.44 | 32.06 |
| CDY50321 | Canola | nucleus | 38.97 | 31.09 |
| CDY39248 | Canola | cytosol | 23.47 | 30.86 |
| CDY60000 | Canola | nucleus, plastid | 21.6 | 30.67 |
| CDY58140 | Canola | nucleus, plastid | 21.13 | 30.0 |
| CDY11864 | Canola | nucleus, plastid | 20.19 | 28.67 |
| CDX79357 | Canola | nucleus | 29.58 | 27.88 |
| CDX67963 | Canola | nucleus | 29.11 | 27.43 |
| CDY39947 | Canola | nucleus | 27.7 | 26.82 |
| CDY66132 | Canola | nucleus | 28.17 | 26.32 |
| CDY71759 | Canola | nucleus | 27.23 | 25.55 |
| CDX87338 | Canola | nucleus | 26.76 | 25.45 |
| CDX69795 | Canola | nucleus | 25.82 | 22.73 |
| CDX88160 | Canola | nucleus | 25.82 | 22.36 |
| CDX97070 | Canola | nucleus | 25.35 | 22.31 |
| CDY05474 | Canola | nucleus | 25.82 | 22.18 |
| CDY05377 | Canola | nucleus | 25.35 | 21.77 |
| CDY19813 | Canola | nucleus | 24.88 | 20.87 |
| CDX87097 | Canola | plastid | 10.33 | 15.83 |
Protein Annotations
| EnsemblPlants:CDY03873 | EnsemblPlantsGene:GSBRNA2T00117354001 | Gene3D:3.30.160.60 | GO:A0A078EWC8 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF239 |
| PFscan:PS50157 | ProteinID:CDY03873 | ProteinID:CDY03873.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 |
| UniParc:UPI0004EE36EE | MapMan:15.5.15 | : | : | : | : |
Description
BnaC07g10980D
Coordinates
chrLK031947:+:474114..474755
Molecular Weight (calculated)
23874.9 Da
IEP (calculated)
7.322
GRAVY (calculated)
-0.714
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MTESDDASRE LPVREGETLS NQDLSKTQAI IPVSLDLKLK DNFNDEQKGT KRGSNPRVFS CNYCKRKFYS SQALGGHQNA HKRERTMAKR AMYMGRMFGH
101: HHRPYTYSSS SLGMQAHSGL LHHTLSQPQP PPPPLARFHQ QGYFGNTVPL FFDYDDGSDF FWPGSFRQAV EEVEAPVVVA VTESGLDLNS AAANESVVDN
201: NNNSLKPDLT LRL
101: HHRPYTYSSS SLGMQAHSGL LHHTLSQPQP PPPPLARFHQ QGYFGNTVPL FFDYDDGSDF FWPGSFRQAV EEVEAPVVVA VTESGLDLNS AAANESVVDN
201: NNNSLKPDLT LRL
001: MTESDDASRE TPASRGGEAS SNQDLSKPES NHVSLDLKLN DTFNDDTKST KCEANPRVFS CNYCRRKFYS SQALGGHQNA HKRERTMAKR AMHMGRMFGH
101: HHRPYTYTSS SLGMQAHSGL LHHTLSQPQP LVSRFHHQGY FGNTVPLFFD YDDGGSDFFW PGSFRQVVEE AEAPVVVVAS TESGLDLNSV AANGGVDNNS
201: SKPDLTLRL
101: HHRPYTYTSS SLGMQAHSGL LHHTLSQPQP LVSRFHHQGY FGNTVPLFFD YDDGGSDFFW PGSFRQVVEE AEAPVVVVAS TESGLDLNSV AANGGVDNNS
201: SKPDLTLRL
Arabidopsis Description
ZFP7Zinc finger protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39266]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.