Factsheet for Bra012496.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002106.1-P
Bra004436.1-P
Bra006420.1-P
Bra007736.1-P
Bra017974.1-P
Bra025315.1-P
Bra028662.1-P
Bra040437.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24625.1	Bra004436.1-P	AT2G47700.1	21798944
AT1G24625.1	Bra025315.1-P	AT3G27960.1	21798944
AT1G24625.1	Bra017974.1-P	AT3G49580.1	21798944
AT1G24625.1	Bra007736.1-P	AT3G63210.1	21798944
AT1G24625.1	Bra040437.1-P	AT3G63210.1	21798944
AT1G24625.1	Bra028662.1-P	AT5G08330.1	21798944
AT1G24625.1	Bra002106.1-P	AT5G17790.1	21798944
AT1G24625.1	Bra006420.1-P	AT5G17790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72110	Canola	nucleus	97.65	97.65
CDY03873	Canola	nucleus	94.37	94.37
Bra010975.1-P	Field mustard	nucleus	87.79	88.63
AT1G24625.1	Thale cress	nucleus	83.57	85.17
Bra004148.1-P	Field mustard	nucleus	40.38	33.86
Bra039750.1-P	Field mustard	nucleus	39.91	32.44
Bra020437.1-P	Field mustard	nucleus, plastid	22.07	31.33
Bra006815.1-P	Field mustard	nucleus, plastid	20.66	29.33
Bra003582.1-P	Field mustard	nucleus	28.64	28.24
Bra008445.1-P	Field mustard	nucleus	27.7	27.19
Bra035157.1-P	Field mustard	nucleus	26.76	26.64
Bra009000.1-P	Field mustard	nucleus	25.82	22.73
Bra020486.1-P	Field mustard	nucleus	25.35	21.77
Bra009822.1-P	Field mustard	nucleus	25.82	21.65
Bra036535.1-P	Field mustard	nucleus	24.41	20.47

Protein Annotations

EnsemblPlants:Bra012496.1	EnsemblPlants:Bra012496.1-P	EnsemblPlantsGene:Bra012496	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF239
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667	UniParc:UPI000254123B	UniProt:M4D7N6
MapMan:15.5.15	:	:	:	:	:

Description

AT1G24625 (E=7e-083) ZFP7 | ZFP7 (ZINC FINGER PROTEIN 7); nucleic acid binding / transcription factor/ zinc ion binding

Coordinates

chrA07:-:7193590..7194231

Molecular Weight (calculated)

24133.2 Da

IEP (calculated)

6.603

GRAVY (calculated)

-0.725

Length

213 amino acids

Sequence
(BLAST)

001: MTESDDASRE LPVREEETLS NQDLSKPEAI IPVSLDLKLN DSFNDEQKGT KRESNPRVFS CNYCRRKFYS SQALGGHQNA HKRERTMAKR AMYMGRMFGH
101: HHRPYTYSSS SLGMQAHSGL LHHTLSQPQP PPPPLARFHQ QGYFGNTVPL FFDYDDGSDF FWPGSFRQVV EEVEAPMVVA VTESGLDLNS VAANESVVDI
201: NNNSRKPDLT LRL

Best Arabidopsis Sequence Match ( AT1G24625.1 )
(BLAST)

001: MTESDDASRE TPASRGGEAS SNQDLSKPES NHVSLDLKLN DTFNDDTKST KCEANPRVFS CNYCRRKFYS SQALGGHQNA HKRERTMAKR AMHMGRMFGH
101: HHRPYTYTSS SLGMQAHSGL LHHTLSQPQP LVSRFHHQGY FGNTVPLFFD YDDGGSDFFW PGSFRQVVEE AEAPVVVVAS TESGLDLNSV AANGGVDNNS
201: SKPDLTLRL

Arabidopsis Description

ZFP7Zinc finger protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39266]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.