Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69795 | Canola | nucleus | 100.0 | 100.0 |
| CDX97070 | Canola | nucleus | 96.69 | 96.69 |
| AT5G10970.1 | Thale cress | nucleus | 77.69 | 69.12 |
| Bra020486.1-P | Field mustard | nucleus | 59.09 | 57.66 |
| Bra036535.1-P | Field mustard | nucleus | 54.13 | 51.57 |
| Bra009822.1-P | Field mustard | nucleus | 53.72 | 51.18 |
| Solyc06g068390.1.1 | Tomato | nucleus | 29.75 | 40.68 |
| VIT_09s0002g09080.t01 | Wine grape | nucleus | 43.39 | 39.33 |
| PGSC0003DMT400073330 | Potato | nucleus | 32.64 | 39.3 |
| KRH44531 | Soybean | nucleus | 34.3 | 36.89 |
| Bra008445.1-P | Field mustard | nucleus | 32.64 | 36.41 |
| Bra035157.1-P | Field mustard | nucleus | 31.82 | 35.98 |
| KRH23633 | Soybean | nucleus | 33.47 | 35.53 |
| Bra006815.1-P | Field mustard | nucleus, plastid | 21.9 | 35.33 |
| Bra003582.1-P | Field mustard | nucleus | 31.41 | 35.19 |
| Bra020437.1-P | Field mustard | nucleus, plastid | 21.49 | 34.67 |
| KRH47378 | Soybean | nucleus | 37.19 | 34.48 |
| KRH61695 | Soybean | nucleus | 39.26 | 33.81 |
| KRH09666 | Soybean | nucleus | 35.95 | 32.71 |
| GSMUA_Achr2P05140_001 | Banana | nucleus | 33.47 | 32.02 |
| KRH52363 | Soybean | nucleus | 38.43 | 31.74 |
| KRH15782 | Soybean | nucleus | 40.5 | 31.41 |
| GSMUA_Achr5P22810_001 | Banana | nucleus | 32.64 | 30.74 |
| GSMUA_Achr6P01990_001 | Banana | nucleus | 30.17 | 29.44 |
| KRH05270 | Soybean | nucleus | 39.67 | 29.27 |
| GSMUA_Achr8P29430_001 | Banana | nucleus | 30.99 | 29.18 |
| TraesCS6D01G135200.1 | Wheat | nucleus | 20.25 | 28.32 |
| TraesCS6A01G145900.1 | Wheat | nucleus | 21.07 | 27.57 |
| HORVU0Hr1G015760.1 | Barley | nucleus | 19.83 | 27.43 |
| Bra010975.1-P | Field mustard | nucleus | 22.73 | 26.07 |
| Bra004148.1-P | Field mustard | nucleus | 27.27 | 25.98 |
| Bra012496.1-P | Field mustard | nucleus | 22.73 | 25.82 |
| Os02t0182300-00 | Rice | cytosol, mitochondrion, peroxisome | 20.25 | 25.26 |
| OQU84499 | Sorghum | nucleus | 20.25 | 25.13 |
| Bra039750.1-P | Field mustard | nucleus | 26.03 | 24.05 |
| TraesCS5D01G354900.1 | Wheat | nucleus | 21.49 | 23.42 |
| TraesCS5D01G355400.1 | Wheat | nucleus | 22.31 | 22.31 |
| TraesCS3B01G560300.1 | Wheat | nucleus | 22.73 | 21.65 |
| TraesCS3D01G505300.1 | Wheat | nucleus | 22.73 | 21.32 |
| TraesCS3A01G497500.1 | Wheat | nucleus | 22.73 | 21.15 |
| Zm00001d015525_P001 | Maize | nucleus | 15.29 | 21.14 |
| EES00097 | Sorghum | nucleus | 23.97 | 19.59 |
| Zm00001d050143_P001 | Maize | nucleus | 22.31 | 19.08 |
Protein Annotations
| EnsemblPlants:Bra009000.1 | EnsemblPlants:Bra009000.1-P | EnsemblPlantsGene:Bra009000 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF258 |
| PFscan:PS50157 | ScanProsite:PS00028 | SUPFAM:SSF57667 | UniParc:UPI00025444D8 | UniProt:M4CXQ3 | MapMan:15.5.15 |
Description
AT5G10970 (E=2e-094) | zinc finger (C2H2 type) family protein
Coordinates
chrA10:-:14790124..14790852
Molecular Weight (calculated)
26994.2 Da
IEP (calculated)
5.541
GRAVY (calculated)
-0.764
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MDASRDEPKP SDSSCIVSTS NTLSLSLEHY NIDAEEDDYD QKPGEEGIKL DLMLAEYDYS QPQLNQELNL IDNLDASVAT PSHKGSTSTE QKLFSCNYCQ
101: RTFYSSQALG GHQNAHKRER TLAKRGKQME AFGHPYGYAP VPFHGQYSNR SLGIQAHSMS HKLSSYNAFG AGEYGQFSWS RTPLVQQPAI GRLSSTIENR
201: HQMMFPPPLT STCENFGRFG AGTIPVDSEE EQQKNLDLSL KL
101: RTFYSSQALG GHQNAHKRER TLAKRGKQME AFGHPYGYAP VPFHGQYSNR SLGIQAHSMS HKLSSYNAFG AGEYGQFSWS RTPLVQQPAI GRLSSTIENR
201: HQMMFPPPLT STCENFGRFG AGTIPVDSEE EQQKNLDLSL KL
001: MDSSSGKPRS SDSSCIISAS TSLQFSDSPK LSLENYNIDT VAAQEEDDHD QKEGVEGIKL DLMLAGYDSS QPQLNQELNL LDCLETGVVT PSFNGSTSTE
101: QKLFSCNYCQ RTFYSSQALG GHQNAHKRER TLAKRGQRMA SAAAFGHPYG FAPVPFHGQY SNRTLGIQAH SMSHKPSSYN VYGGEYGQIN WSRIPLVQQP
201: AIAKLTSTEN HYNHHQMMIA PPLTSTCENI GRFDVGRIPV EFPTSELWQR GEELLKPAEE EKQKNLDLSL KL
101: QKLFSCNYCQ RTFYSSQALG GHQNAHKRER TLAKRGQRMA SAAAFGHPYG FAPVPFHGQY SNRTLGIQAH SMSHKPSSYN VYGGEYGQIN WSRIPLVQQP
201: AIAKLTSTEN HYNHHQMMIA PPLTSTCENI GRFDVGRIPV EFPTSELWQR GEELLKPAEE EKQKNLDLSL KL
Arabidopsis Description
C2H2 and C2HC zinc fingers superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LEU3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.