Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra001386.1-P | |
| Bra029889.1-P | |
| Bra034159.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G66140.1 | Bra001386.1-P | AT3G11020.1 | 21245844 |
| AT1G66140.1 | Bra029889.1-P | AT3G11020.1 | 21245844 |
| AT1G66140.1 | Bra034159.1-P | AT3G11020.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07483 | Canola | nucleus | 96.46 | 99.59 |
| CDY39248 | Canola | cytosol | 57.48 | 90.12 |
| AT1G66140.1 | Thale cress | nucleus | 81.5 | 79.62 |
| Bra039750.1-P | Field mustard | nucleus | 78.74 | 76.34 |
| PGSC0003DMT400075890 | Potato | nucleus | 26.38 | 46.85 |
| PGSC0003DMT400075898 | Potato | nucleus | 41.34 | 44.68 |
| PGSC0003DMT400075895 | Potato | nucleus | 40.94 | 44.26 |
| GSMUA_Achr6P11350_001 | Banana | nucleus | 37.4 | 42.79 |
| KRG89273 | Soybean | nucleus | 39.76 | 42.44 |
| PGSC0003DMT400058615 | Potato | nucleus | 41.73 | 42.4 |
| Solyc01g005130.2.1 | Tomato | nucleus | 41.34 | 42.0 |
| KRH04587 | Soybean | cytosol | 32.28 | 41.41 |
| Bra010975.1-P | Field mustard | nucleus | 34.25 | 41.23 |
| Bra012496.1-P | Field mustard | nucleus | 33.86 | 40.38 |
| KRH58613 | Soybean | nucleus | 38.58 | 39.36 |
| KRH42519 | Soybean | nucleus | 38.19 | 38.65 |
| KRH49708 | Soybean | nucleus | 37.01 | 37.01 |
| Bra006815.1-P | Field mustard | nucleus, plastid | 20.87 | 35.33 |
| Bra020437.1-P | Field mustard | nucleus, plastid | 20.87 | 35.33 |
| Zm00001d047968_P001 | Maize | nucleus | 29.13 | 34.91 |
| Os03t0239300-01 | Rice | nucleus | 31.1 | 32.92 |
| EER92577 | Sorghum | cytosol, mitochondrion, nucleus | 29.53 | 32.75 |
| TraesCS4D01G230300.1 | Wheat | nucleus | 27.95 | 32.57 |
| HORVU4Hr1G064150.1 | Barley | plastid | 30.32 | 32.49 |
| Zm00001d028371_P001 | Maize | nucleus | 27.95 | 32.42 |
| Bra008445.1-P | Field mustard | nucleus | 27.17 | 31.8 |
| Bra035157.1-P | Field mustard | nucleus | 26.38 | 31.31 |
| TraesCS4B01G229200.1 | Wheat | nucleus | 29.92 | 31.28 |
| TraesCS4A01G073200.1 | Wheat | nucleus | 29.53 | 30.99 |
| Bra003582.1-P | Field mustard | nucleus | 25.98 | 30.56 |
| Bra009000.1-P | Field mustard | nucleus | 25.98 | 27.27 |
| Bra020486.1-P | Field mustard | nucleus | 25.59 | 26.21 |
| Bra009822.1-P | Field mustard | nucleus | 24.8 | 24.8 |
| Bra036535.1-P | Field mustard | nucleus | 23.23 | 23.23 |
| HORVU0Hr1G008920.1 | Barley | mitochondrion | 6.3 | 21.05 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EnsemblPlantsGene:Bra004148 | EnsemblPlants:Bra004148.1 | EnsemblPlants:Bra004148.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009719 | GO:GO:0009788 | GO:GO:0009987 | GO:GO:0019748 | GO:GO:0019760 |
| GO:GO:0043565 | GO:GO:0044212 | InterPro:IPR013087 | UniProt:M4CIW4 | ScanProsite:PS00028 | PFscan:PS50157 |
| PANTHER:PTHR26374 | PANTHER:PTHR26374:SF239 | SUPFAM:SSF57667 | UniParc:UPI00025414E8 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type |
| SEG:seg | : | : | : | : | : |
Description
AT1G66140 (E=7e-075) ZFP4 | ZFP4 (ZINC FINGER PROTEIN 4); nucleic acid binding / transcription factor/ zinc ion binding
Coordinates
chrA07:-:17074240..17075004
Molecular Weight (calculated)
28064.7 Da
IEP (calculated)
6.154
GRAVY (calculated)
-0.571
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSILDLEAE ASSEHNHPED TSSQAASNLS PVEEYCRPIS LNLSLRFNNN NNNLDLESSS LTLPISSTSE SSNPEQQQQQ QQQPSALKRV FSCNYCQRKF
101: YSSQALGGHQ NAHKRERTLA KRAMRMGLAG VFPRGSSTPY ATAALSCLPL HGNMTSLRTL GIQAHGSSHD PRPAPETIIR NIARFNQGYF SNCVPFYVED
201: DDTELLWPGS FRQAAGAVRA EACNDNLGES KVDFLEVKQA VDMESCLPDL TLKL
101: YSSQALGGHQ NAHKRERTLA KRAMRMGLAG VFPRGSSTPY ATAALSCLPL HGNMTSLRTL GIQAHGSSHD PRPAPETIIR NIARFNQGYF SNCVPFYVED
201: DDTELLWPGS FRQAAGAVRA EACNDNLGES KVDFLEVKQA VDMESCLPDL TLKL
001: MRPILDLEIE ASSGSSSSQV ASNLSPVGED YKPISLNLSL SFNNNNNNNL DLESSSLTLP LSSTSESSNP EQQQQQQPSV SKRVFSCNYC QRKFYSSQAL
101: GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
201: PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME SSLPDLTLKL
101: GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
201: PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME SSLPDLTLKL
Arabidopsis Description
ZFP4Zinc finger protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q39263]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.