Factsheet for Os03t0239300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G230300.1	Wheat	nucleus	64.17	70.64
Zm00001d028371_P001	Maize	nucleus	61.67	67.58
EER92577	Sorghum	cytosol, mitochondrion, nucleus	63.75	66.81
HORVU4Hr1G064150.1	Barley	plastid	65.83	66.67
TraesCS4A01G073200.1	Wheat	nucleus	67.08	66.53
TraesCS4B01G229200.1	Wheat	nucleus	67.08	66.26
Zm00001d047968_P001	Maize	nucleus	57.08	64.62
HORVU0Hr1G008920.1	Barley	mitochondrion	18.75	59.21
PGSC0003DMT400075890	Potato	nucleus	21.67	36.36
PGSC0003DMT400075895	Potato	nucleus	33.33	34.04
PGSC0003DMT400075898	Potato	nucleus	33.33	34.04
Solyc04g014540.1.1	Tomato	nucleus	32.5	33.62
PGSC0003DMT400060730	Potato	nucleus	32.5	33.05
KRH17304	Soybean	nucleus	35.0	32.68
Solyc11g011890.1.1	Tomato	nucleus	33.33	32.52
PGSC0003DMT400034689	Potato	nucleus	33.33	32.39
KRH72952	Soybean	nucleus	34.58	32.3
VIT_01s0011g06200.t01	Wine grape	nucleus	32.92	32.11
CDY07483	Canola	nucleus	32.5	31.71
Os08t0555700-00	Rice	cytosol, nucleus, plastid	20.83	31.65
Solyc01g005130.2.1	Tomato	nucleus	32.92	31.6
PGSC0003DMT400058615	Potato	nucleus	32.5	31.2
Bra004148.1-P	Field mustard	nucleus	32.92	31.1
KRG89273	Soybean	nucleus	30.83	31.09
KRH04587	Soybean	cytosol	25.42	30.81
Os12t0581900-01	Rice	nucleus	25.0	30.77
KRH58613	Soybean	nucleus	31.67	30.52
AT1G66140.1	Thale cress	nucleus	32.5	30.0
CDY50321	Canola	nucleus	33.33	29.96
CDY65468	Canola	nucleus	32.5	29.77
Bra039750.1-P	Field mustard	nucleus	32.5	29.77
KRH42519	Soybean	nucleus	30.83	29.48
KRG97966	Soybean	nucleus	30.83	29.48
KRH30916	Soybean	nucleus	29.58	28.51
KRH49708	Soybean	nucleus	30.0	28.35
Os03t0607700-01	Rice	nucleus	28.75	28.16
Os02t0182300-00	Rice	cytosol, mitochondrion, peroxisome	22.08	27.32
CDY39248	Canola	cytosol	17.92	26.54
Os07t0593000-01	Rice	nucleus	20.42	26.06
GSMUA_Achr10P...	Banana	nucleus	22.08	25.6

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EntrezGene:4332200	ProteinID:ABF94874.1	ProteinID:ABF94875.1	EMBL:AK066038
EMBL:AK071768	ProteinID:BAF11419.1	ProteinID:BAS83181.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EMBL:HQ858817	InterPro:IPR013087
EnsemblPlantsGene:Os03g0239300	EnsemblPlants:Os03t0239300-01	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF245
UniProt:Q10PC4	SUPFAM:SSF57667	UniParc:UPI0000DB4CC2	RefSeq:XP_015628354.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type
SEG:seg	:	:	:	:	:

Description

Zinc finger, C2H2-type domain containing protein. (Os03t0239300-01);Zinc finger, C2H2-type domain containing protein. (Os03t0239300-02);Zinc finger, C2H2-type domain containing protein. (Os03t0239300-03)

Coordinates

chr3:-:7353103..7354368

Molecular Weight (calculated)

24530.3 Da

IEP (calculated)

7.253

GRAVY (calculated)

-0.210

Length

240 amino acids

Sequence
(BLAST)

001: MKSSSQEAGE EVSEISSQAA SNNNETCNSS SGKVSLDLSL TVAAAAAAAA SATESSTTDS GGTRPAATAT ATAREPARVF TCNYCQRKFF SSQALGGHQN
101: AHRRERTLAR RAVRLDAFPY GYADVASLPL YGAGLYPIGI QAHASVHHHH PGVAAPAGRA ELRSARALLG PMPFFVQAAG DEDASFGWPG SFRPPPTAAT
201: TIPAAAAAPV AVNSGSSNSN HGGSVVVQAA ADEPDLTLRL

Best Arabidopsis Sequence Match ( AT1G66140.1 )
(BLAST)

001: MRPILDLEIE ASSGSSSSQV ASNLSPVGED YKPISLNLSL SFNNNNNNNL DLESSSLTLP LSSTSESSNP EQQQQQQPSV SKRVFSCNYC QRKFYSSQAL
101: GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
201: PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME SSLPDLTLKL

Arabidopsis Description

ZFP4Zinc finger protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q39263]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.