Factsheet for PGSC0003DMT400060730

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g014540.1.1	Tomato	nucleus	95.76	97.41
PGSC0003DMT400034689	Potato	nucleus	68.22	65.18
KRH72952	Soybean	nucleus	55.93	51.36
KRH17304	Soybean	nucleus	55.08	50.58
PGSC0003DMT400075890	Potato	nucleus	29.24	48.25
KRG97966	Soybean	nucleus	50.42	47.41
PGSC0003DMT400058615	Potato	nucleus	48.31	45.6
PGSC0003DMT400075895	Potato	nucleus	44.92	45.11
PGSC0003DMT400075898	Potato	nucleus	44.49	44.68
KRH30916	Soybean	nucleus	46.61	44.18
GSMUA_Achr6P11350_001	Banana	nucleus	41.1	43.69
VIT_01s0011g06200.t01	Wine grape	nucleus	45.34	43.5
PGSC0003DMT400059824	Potato	nucleus	27.12	37.21
PGSC0003DMT400066536	Potato	nucleus	27.12	36.99
PGSC0003DMT400048247	Potato	nucleus, plastid	22.03	33.55
PGSC0003DMT400073330	Potato	nucleus	27.97	32.84
Zm00001d047968_P001	Maize	nucleus	29.24	32.55
Os03t0239300-01	Rice	nucleus	33.05	32.5
TraesCS4D01G230300.1	Wheat	nucleus	29.66	32.11
Zm00001d028371_P001	Maize	nucleus	29.66	31.96
HORVU4Hr1G064150.1	Barley	plastid	31.78	31.65
TraesCS4A01G073200.1	Wheat	nucleus	32.2	31.41
TraesCS4B01G229200.1	Wheat	nucleus	32.2	31.28
EER92577	Sorghum	cytosol, mitochondrion, nucleus	29.66	30.57
PGSC0003DMT400036628	Potato	nucleus	27.97	29.73
HORVU0Hr1G008920.1	Barley	mitochondrion	6.78	21.05

Protein Annotations

EntrezGene:102595753	MapMan:15.5.15	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	UniProt:M1C6B6	EnsemblPlantsGene:PGSC0003DMG400023618	PGSC:PGSC0003DMG400023618	EnsemblPlants:PGSC0003DMT400060730	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF239	SUPFAM:SSF57667	UniParc:UPI0002965315	RefSeq:XP_006346762.1
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	:	:	:	:

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023618]

Coordinates

chr4:+:8497232..8498645

Molecular Weight (calculated)

25877.8 Da

IEP (calculated)

5.971

GRAVY (calculated)

-0.442

Length

236 amino acids

Sequence
(BLAST)

001: MEASSGNDSD ITSQVASNIE FSQFSPEPVS LDLSLGFNSG TDEFASQDSI GFSVSSTCDE SSNELAASQT SGEAVVRRVF TCNFCKRKFY SSQALGGHQN
101: AHKRERTLAK RAMRMGIFSE RYGNLAALPL HGSTARSLGI KAHSSMHQGF PQAMGSLDFR TSARFEYVHH QSPSLYVEDI DEADHLLWPG SFRQVTNVDI
201: SHHPTISFTG CSNVNSVEWT PSVEKDNSTP DLTLRL

Best Arabidopsis Sequence Match ( AT1G80730.1 )
(BLAST)

001: MEPSIKGDQE MLKIKKQGHQ DLELGLTLLS RGTATSSELN LIDSFKTSSS STSHHQHQQE QLADPRVFSC NYCQRKFYSS QALGGHQNAH KRERTLAKRG
101: QYYKMTLSSL PSSAFAFGHG SVSRFASMAS LPLHGSVNNR STLGIQAHST IHKPSFLGRQ TTSLSHVFKQ SIHQKPTIGK MLPEKFHLEV AGNNNSNMVA
201: AKLERIGHFK SNQEDHNQFK KIDLTLKL

Arabidopsis Description

ZFP1At1g80730 [Source:UniProtKB/TrEMBL;Acc:Q0V814]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.