Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G221900.1 | |
| TraesCS1B01G235100.2 | |
| TraesCS1D01G223600.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G66140.1 | TraesCS1A01G221900.1 | AT3G11020.1 | 21245844 |
| AT1G66140.1 | TraesCS1B01G235100.2 | AT3G11020.1 | 21245844 |
| AT1G66140.1 | TraesCS1D01G223600.2 | AT3G11020.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G073200.1 | Wheat | nucleus | 97.25 | 87.6 |
| TraesCS4B01G229200.1 | Wheat | nucleus | 96.33 | 86.42 |
| HORVU4Hr1G064150.1 | Barley | plastid | 91.74 | 84.39 |
| HORVU0Hr1G008920.1 | Barley | mitochondrion | 22.94 | 65.79 |
| Os03t0239300-01 | Rice | nucleus | 70.64 | 64.17 |
| Zm00001d028371_P001 | Maize | nucleus | 62.84 | 62.56 |
| Zm00001d047968_P001 | Maize | nucleus | 59.63 | 61.32 |
| EER92577 | Sorghum | cytosol, mitochondrion, nucleus | 63.76 | 60.7 |
| PGSC0003DMT400075890 | Potato | nucleus | 22.48 | 34.27 |
| Solyc11g011890.1.1 | Tomato | nucleus | 33.95 | 30.08 |
| PGSC0003DMT400034689 | Potato | nucleus | 33.95 | 29.96 |
| PGSC0003DMT400075898 | Potato | nucleus | 32.11 | 29.79 |
| PGSC0003DMT400075895 | Potato | nucleus | 32.11 | 29.79 |
| VIT_01s0011g06200.t01 | Wine grape | nucleus | 33.49 | 29.67 |
| PGSC0003DMT400060730 | Potato | nucleus | 32.11 | 29.66 |
| Solyc04g014540.1.1 | Tomato | nucleus | 31.19 | 29.31 |
| TraesCS5D01G369800.1 | Wheat | nucleus | 21.1 | 29.11 |
| KRH17304 | Soybean | nucleus | 33.95 | 28.79 |
| TraesCS7D01G276700.1 | Wheat | nucleus | 20.18 | 28.76 |
| TraesCS2D01G191700.1 | Wheat | nucleus | 23.39 | 28.49 |
| CDY07483 | Canola | nucleus | 32.11 | 28.46 |
| KRH72952 | Soybean | nucleus | 33.49 | 28.4 |
| KRH04587 | Soybean | cytosol | 25.69 | 28.28 |
| Solyc01g005130.2.1 | Tomato | nucleus | 32.11 | 28.0 |
| PGSC0003DMT400058615 | Potato | nucleus | 32.11 | 28.0 |
| Bra004148.1-P | Field mustard | nucleus | 32.57 | 27.95 |
| Bra039750.1-P | Field mustard | nucleus | 33.49 | 27.86 |
| CDY65468 | Canola | nucleus | 33.49 | 27.86 |
| KRG89273 | Soybean | nucleus | 30.28 | 27.73 |
| CDY50321 | Canola | nucleus | 33.49 | 27.34 |
| KRH58613 | Soybean | nucleus | 31.19 | 27.31 |
| AT1G66140.1 | Thale cress | nucleus | 32.57 | 27.31 |
| TraesCS6D01G135200.1 | Wheat | nucleus | 21.56 | 27.17 |
| TraesCS5D01G084600.1 | Wheat | nucleus | 23.39 | 27.13 |
| TraesCS5D01G369900.1 | Wheat | nucleus | 20.64 | 26.63 |
| KRH42519 | Soybean | nucleus | 30.28 | 26.29 |
| KRG97966 | Soybean | nucleus | 29.82 | 25.9 |
| KRH49708 | Soybean | nucleus | 29.82 | 25.59 |
| TraesCS4D01G077000.1 | Wheat | nucleus | 26.15 | 25.22 |
| GSMUA_Achr10P... | Banana | nucleus | 23.85 | 25.12 |
| KRH30916 | Soybean | nucleus | 27.98 | 24.5 |
| TraesCS5D01G354900.1 | Wheat | nucleus | 22.94 | 22.52 |
| TraesCS3D01G505300.1 | Wheat | nucleus | 26.15 | 22.09 |
| CDY39248 | Canola | cytosol | 15.14 | 20.37 |
| TraesCS5D01G355400.1 | Wheat | nucleus | 22.48 | 20.25 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G230300.1 | EnsemblPlantsGene:TraesCS4D01G230300 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF245 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | MapMan:15.5.15 | : | : |
Description
No Description!
Coordinates
chr4D:+:390273595..390274317
Molecular Weight (calculated)
22765.2 Da
IEP (calculated)
5.600
GRAVY (calculated)
-0.382
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSSSVQEAC EDQVSEISSQ AASNNNEASN TSSGPKLALD LSLTVTAAAA AATTTAESST TDSNNGGGQA AREPTRVFTC NYCQRKFFSS QALGGHQNAH
101: RRERTLARRA VHRLEAYPYG YADVASLPLY GSPGLYPIGI QAHASALQGA AAQAERQQHQ QQDAAVLAAP ARARALLGPM PFLVGGDEEV SFGWPGSSSG
201: SGSVVVQADE EPDLTLRL
101: RRERTLARRA VHRLEAYPYG YADVASLPLY GSPGLYPIGI QAHASALQGA AAQAERQQHQ QQDAAVLAAP ARARALLGPM PFLVGGDEEV SFGWPGSSSG
201: SGSVVVQADE EPDLTLRL
001: MEPSIKGDQE MLKIKKQGHQ DLELGLTLLS RGTATSSELN LIDSFKTSSS STSHHQHQQE QLADPRVFSC NYCQRKFYSS QALGGHQNAH KRERTLAKRG
101: QYYKMTLSSL PSSAFAFGHG SVSRFASMAS LPLHGSVNNR STLGIQAHST IHKPSFLGRQ TTSLSHVFKQ SIHQKPTIGK MLPEKFHLEV AGNNNSNMVA
201: AKLERIGHFK SNQEDHNQFK KIDLTLKL
101: QYYKMTLSSL PSSAFAFGHG SVSRFASMAS LPLHGSVNNR STLGIQAHST IHKPSFLGRQ TTSLSHVFKQ SIHQKPTIGK MLPEKFHLEV AGNNNSNMVA
201: AKLERIGHFK SNQEDHNQFK KIDLTLKL
Arabidopsis Description
ZFP1At1g80730 [Source:UniProtKB/TrEMBL;Acc:Q0V814]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.