Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039750.1-P | Field mustard | nucleus | 84.62 | 83.97 |
| CDY50321 | Canola | nucleus | 86.15 | 83.9 |
| CDY65468 | Canola | nucleus | 84.23 | 83.59 |
| Bra004148.1-P | Field mustard | nucleus | 79.62 | 81.5 |
| CDY07483 | Canola | nucleus | 76.92 | 81.3 |
| CDY39248 | Canola | cytosol | 45.77 | 73.46 |
| PGSC0003DMT400075890 | Potato | nucleus | 25.77 | 46.85 |
| PGSC0003DMT400075898 | Potato | nucleus | 41.92 | 46.38 |
| PGSC0003DMT400075895 | Potato | nucleus | 41.54 | 45.96 |
| GSMUA_Achr6P11350_001 | Banana | nucleus | 38.08 | 44.59 |
| PGSC0003DMT400058615 | Potato | nucleus | 42.31 | 44.0 |
| Solyc01g005130.2.1 | Tomato | nucleus | 41.92 | 43.6 |
| KRG89273 | Soybean | nucleus | 39.62 | 43.28 |
| AT1G24625.1 | Thale cress | nucleus | 34.23 | 42.58 |
| KRH04587 | Soybean | cytosol | 32.31 | 42.42 |
| KRH58613 | Soybean | nucleus | 40.38 | 42.17 |
| KRH42519 | Soybean | nucleus | 40.38 | 41.83 |
| KRH49708 | Soybean | nucleus | 37.31 | 38.19 |
| AT5G57520.1 | Thale cress | nucleus, plastid | 20.38 | 35.33 |
| Zm00001d047968_P001 | Maize | nucleus | 28.08 | 34.43 |
| TraesCS4D01G230300.1 | Wheat | nucleus | 27.31 | 32.57 |
| Os03t0239300-01 | Rice | nucleus | 30.0 | 32.5 |
| EER92577 | Sorghum | cytosol, mitochondrion, nucleus | 28.46 | 32.31 |
| HORVU4Hr1G064150.1 | Barley | plastid | 29.23 | 32.07 |
| Zm00001d028371_P001 | Maize | nucleus | 26.92 | 31.96 |
| TraesCS4A01G073200.1 | Wheat | nucleus | 28.85 | 30.99 |
| TraesCS4B01G229200.1 | Wheat | nucleus | 28.85 | 30.86 |
| AT1G80730.1 | Thale cress | nucleus | 26.92 | 30.7 |
| AT5G25160.1 | Thale cress | nucleus | 25.38 | 28.09 |
| AT5G10970.1 | Thale cress | nucleus | 25.38 | 24.26 |
| HORVU0Hr1G008920.1 | Barley | mitochondrion | 6.54 | 22.37 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:842928 | ProteinID:AAG51296.1 | ProteinID:AEE34466.1 | EMBL:AF361630 |
| EMBL:AK230229 | EMBL:AK230232 | EMBL:AK230250 | ArrayExpress:AT1G66140 | EnsemblPlantsGene:AT1G66140 | RefSeq:AT1G66140 |
| TAIR:AT1G66140 | RefSeq:AT1G66140-TAIR-G | EnsemblPlants:AT1G66140.1 | TAIR:AT1G66140.1 | EMBL:AY056067 | EMBL:AY058087 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009738 |
| GO:GO:0009788 | GO:GO:0009987 | GO:GO:0019748 | GO:GO:0019760 | GO:GO:0043565 | GO:GO:0044212 |
| GO:GO:0046872 | InterPro:IPR013087 | EMBL:L39647 | RefSeq:NP_176788.1 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009025 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 |
| PANTHER:PTHR26374:SF239 | UniProt:Q39263 | SUPFAM:SSF57667 | UniParc:UPI000013C3B5 | Symbol:ZFP4 | InterPro:Znf_C2H2_sf |
| InterPro:Znf_C2H2_type | SEG:seg | : | : | : | : |
Description
ZFP4Zinc finger protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q39263]
Coordinates
chr1:-:24619830..24622117
Molecular Weight (calculated)
28310.1 Da
IEP (calculated)
6.670
GRAVY (calculated)
-0.489
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPILDLEIE ASSGSSSSQV ASNLSPVGED YKPISLNLSL SFNNNNNNNL DLESSSLTLP LSSTSESSNP EQQQQQQPSV SKRVFSCNYC QRKFYSSQAL
101: GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
201: PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME SSLPDLTLKL
101: GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
201: PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME SSLPDLTLKL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.