Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G060490.5 | |
| HORVU6Hr1G050500.2 | |
| HORVU6Hr1G050520.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G66140.1 | HORVU1Hr1G060490.5 | AT3G11020.1 | 21245844 |
| AT1G66140.1 | HORVU6Hr1G050500.2 | AT3G11020.1 | 21245844 |
| AT1G66140.1 | HORVU6Hr1G050520.2 | AT3G11020.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G008920.1 | Barley | mitochondrion | 31.65 | 98.68 |
| TraesCS4D01G230300.1 | Wheat | nucleus | 84.39 | 91.74 |
| TraesCS4A01G073200.1 | Wheat | nucleus | 92.83 | 90.91 |
| TraesCS4B01G229200.1 | Wheat | nucleus | 91.98 | 89.71 |
| Os03t0239300-01 | Rice | nucleus | 66.67 | 65.83 |
| Zm00001d028371_P001 | Maize | nucleus | 59.49 | 64.38 |
| EER92577 | Sorghum | cytosol, mitochondrion, nucleus | 62.03 | 64.19 |
| Zm00001d047968_P001 | Maize | nucleus | 57.38 | 64.15 |
| PGSC0003DMT400075890 | Potato | nucleus | 20.68 | 34.27 |
| Solyc04g014540.1.1 | Tomato | nucleus | 31.65 | 32.33 |
| PGSC0003DMT400075898 | Potato | nucleus | 31.65 | 31.91 |
| PGSC0003DMT400075895 | Potato | nucleus | 31.65 | 31.91 |
| PGSC0003DMT400060730 | Potato | nucleus | 31.65 | 31.78 |
| Solyc11g011890.1.1 | Tomato | nucleus | 32.91 | 31.71 |
| VIT_01s0011g06200.t01 | Wine grape | nucleus | 32.91 | 31.71 |
| PGSC0003DMT400034689 | Potato | nucleus | 32.91 | 31.58 |
| KRH17304 | Soybean | nucleus | 33.76 | 31.13 |
| CDY07483 | Canola | nucleus | 32.07 | 30.89 |
| KRH04587 | Soybean | cytosol | 25.74 | 30.81 |
| KRH72952 | Soybean | nucleus | 33.33 | 30.74 |
| HORVU4Hr1G013330.1 | Barley | nucleus | 28.69 | 30.63 |
| Solyc01g005130.2.1 | Tomato | nucleus | 32.07 | 30.4 |
| PGSC0003DMT400058615 | Potato | nucleus | 32.07 | 30.4 |
| HORVU5Hr1G018830.1 | Barley | nucleus | 24.47 | 30.37 |
| Bra004148.1-P | Field mustard | nucleus | 32.49 | 30.32 |
| KRG89273 | Soybean | nucleus | 30.38 | 30.25 |
| Bra039750.1-P | Field mustard | nucleus | 32.91 | 29.77 |
| CDY65468 | Canola | nucleus | 32.91 | 29.77 |
| HORVU5Hr1G088880.1 | Barley | nucleus | 18.57 | 29.73 |
| KRH58613 | Soybean | nucleus | 31.22 | 29.72 |
| AT1G66140.1 | Thale cress | nucleus | 32.07 | 29.23 |
| CDY50321 | Canola | nucleus | 32.91 | 29.21 |
| HORVU0Hr1G031830.1 | Barley | nucleus | 18.14 | 29.05 |
| KRH42519 | Soybean | nucleus | 30.38 | 28.69 |
| HORVU2Hr1G034650.1 | Barley | nucleus | 21.52 | 28.49 |
| HORVU5Hr1G088950.1 | Barley | nucleus | 20.68 | 28.49 |
| KRH49708 | Soybean | nucleus | 29.54 | 27.56 |
| KRG97966 | Soybean | nucleus | 29.11 | 27.49 |
| HORVU0Hr1G015760.1 | Barley | nucleus | 19.41 | 26.29 |
| KRH30916 | Soybean | nucleus | 27.43 | 26.1 |
| GSMUA_Achr10P... | Banana | nucleus | 21.94 | 25.12 |
| HORVU5Hr1G088860.1 | Barley | nucleus | 20.68 | 24.38 |
| CDY39248 | Canola | cytosol | 16.03 | 23.46 |
| HORVU7Hr1G058220.1 | Barley | plastid | 18.99 | 22.84 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G064150.1 | EnsemblPlantsGene:HORVU4Hr1G064150 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF245 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | UniParc:UPI000B4756F7 | UniProt:A0A287PDY7 | MapMan:15.5.15 |
Description
No Description!
Coordinates
chrchr4H:+:537530624..537534116
Molecular Weight (calculated)
24811.7 Da
IEP (calculated)
6.392
GRAVY (calculated)
-0.423
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSSSVQEAC EDQVSDISSQ AASNNNEASN TSPRPKLALD LSLTVTAAAA TTAESSTTDS NNGGAQATRE PTRVFTCNYC QRKFFSSQAL GGHQNAHRRE
101: RTLARRAVHR LEAYPYGYAD VASLPLYGSP GLYPIGIQAH ASAHPGAIAA QAERQQQQED AAVHAAXTPA RARALLGPMP FLVGGDEEVS LGWPGSFRPP
201: PPGAGALPLF HSGNNFGSSS GSIVVQADEE PDLTLRL
101: RTLARRAVHR LEAYPYGYAD VASLPLYGSP GLYPIGIQAH ASAHPGAIAA QAERQQQQED AAVHAAXTPA RARALLGPMP FLVGGDEEVS LGWPGSFRPP
201: PPGAGALPLF HSGNNFGSSS GSIVVQADEE PDLTLRL
001: MRPILDLEIE ASSGSSSSQV ASNLSPVGED YKPISLNLSL SFNNNNNNNL DLESSSLTLP LSSTSESSNP EQQQQQQPSV SKRVFSCNYC QRKFYSSQAL
101: GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
201: PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME SSLPDLTLKL
101: GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
201: PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME SSLPDLTLKL
Arabidopsis Description
ZFP4Zinc finger protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q39263]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.