Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07483 | Canola | nucleus | 90.12 | 59.35 |
| Bra004148.1-P | Field mustard | nucleus | 90.12 | 57.48 |
| CDY65468 | Canola | nucleus | 74.69 | 46.18 |
| CDY50321 | Canola | nucleus | 75.93 | 46.07 |
| AT1G66140.1 | Thale cress | nucleus | 73.46 | 45.77 |
| PGSC0003DMT400058615 | Potato | nucleus | 40.12 | 26.0 |
| PGSC0003DMT400075898 | Potato | nucleus | 37.65 | 25.96 |
| PGSC0003DMT400075895 | Potato | nucleus | 37.65 | 25.96 |
| Solyc01g005130.2.1 | Tomato | nucleus | 39.51 | 25.6 |
| CDY69498 | Canola | nucleus | 31.48 | 24.17 |
| CDY24418 | Canola | nucleus | 31.48 | 24.17 |
| KRG89273 | Soybean | nucleus | 35.19 | 23.95 |
| CDY03873 | Canola | nucleus | 30.86 | 23.47 |
| KRH04587 | Soybean | cytosol | 28.4 | 23.23 |
| CDY72110 | Canola | nucleus | 29.63 | 22.54 |
| KRH58613 | Soybean | nucleus | 32.1 | 20.88 |
| KRH42519 | Soybean | nucleus | 30.86 | 19.92 |
| HORVU0Hr1G008920.1 | Barley | mitochondrion | 9.26 | 19.74 |
| KRH49708 | Soybean | nucleus | 30.25 | 19.29 |
| GSMUA_Achr6P11350_001 | Banana | nucleus | 25.31 | 18.47 |
| Zm00001d047968_P001 | Maize | nucleus | 24.07 | 18.4 |
| Os03t0239300-01 | Rice | nucleus | 26.54 | 17.92 |
| PGSC0003DMT400075890 | Potato | nucleus | 15.43 | 17.48 |
| EER92577 | Sorghum | cytosol, mitochondrion, nucleus | 24.07 | 17.03 |
| Zm00001d028371_P001 | Maize | nucleus | 22.84 | 16.89 |
| HORVU4Hr1G064150.1 | Barley | plastid | 23.46 | 16.03 |
| TraesCS4A01G073200.1 | Wheat | nucleus | 22.84 | 15.29 |
| TraesCS4B01G229200.1 | Wheat | nucleus | 22.84 | 15.23 |
| TraesCS4D01G230300.1 | Wheat | nucleus | 20.37 | 15.14 |
| CDY39947 | Canola | nucleus | 19.75 | 14.55 |
| CDY71759 | Canola | nucleus | 20.37 | 14.54 |
| CDY66132 | Canola | nucleus | 20.37 | 14.47 |
| CDX87097 | Canola | plastid | 12.35 | 14.39 |
| CDX79357 | Canola | nucleus | 19.75 | 14.16 |
| CDX87338 | Canola | nucleus | 19.14 | 13.84 |
| CDX67963 | Canola | nucleus | 19.14 | 13.72 |
| CDX69795 | Canola | nucleus | 19.75 | 13.22 |
| CDX97070 | Canola | nucleus | 19.14 | 12.81 |
| CDX88160 | Canola | nucleus | 19.14 | 12.6 |
| CDY05474 | Canola | nucleus | 19.14 | 12.5 |
| CDY05377 | Canola | nucleus | 19.14 | 12.5 |
| CDY19813 | Canola | nucleus | 17.28 | 11.02 |
| CDY58140 | Canola | nucleus, plastid | 9.88 | 10.67 |
| CDY60000 | Canola | nucleus, plastid | 9.88 | 10.67 |
| CDY11864 | Canola | nucleus, plastid | 9.26 | 10.0 |
Protein Annotations
| EnsemblPlants:CDY39248 | EnsemblPlantsGene:GSBRNA2T00067474001 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF239 | ProteinID:CDY39248 | ProteinID:CDY39248.1 |
| SEG:seg | UniParc:UPI0004EE93AA | UniProt:A0A078HR60 | MapMan:35.1 | : | : |
Description
BnaC06g27430DBnaC06g27430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HR60]
Coordinates
chrLK032444:+:20873..21711
Molecular Weight (calculated)
17730.1 Da
IEP (calculated)
5.998
GRAVY (calculated)
-0.220
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSILDLEAE ASSEHNHPED TTVAKLPRTY IRTLAKRAMR MGSSSPYATA ALSCLPLHGN MTSVRTLGIQ AHGSSHDLRP APETIIRNIA RFNQGYFSNC
101: VPFYVEDDGT ELLWLGSFRQ AAGAAVAAEA CNDNLGESKM DFLEVKKAVD MESCLPDLTL KL
101: VPFYVEDDGT ELLWLGSFRQ AAGAAVAAEA CNDNLGESKM DFLEVKKAVD MESCLPDLTL KL
001: MRPILDLEIE ASSGSSSSQV ASNLSPVGED YKPISLNLSL SFNNNNNNNL DLESSSLTLP LSSTSESSNP EQQQQQQPSV SKRVFSCNYC QRKFYSSQAL
101: GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
201: PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME SSLPDLTLKL
101: GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
201: PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME SSLPDLTLKL
Arabidopsis Description
ZFP4Zinc finger protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q39263]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.