Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73896 | Canola | nucleus | 82.7 | 51.31 |
| Bra001386.1-P | Field mustard | nucleus | 81.86 | 50.52 |
| CDY00987 | Canola | nucleus | 40.93 | 31.19 |
| CDY36289 | Canola | nucleus | 37.97 | 30.93 |
| CDY67039 | Canola | nucleus | 37.97 | 30.82 |
| CDY08557 | Canola | nucleus | 39.24 | 29.62 |
| AT3G11020.1 | Thale cress | nucleus | 37.13 | 26.67 |
| CDY04950 | Canola | nucleus | 30.38 | 22.22 |
| CDY52149 | Canola | nucleus | 28.69 | 20.73 |
| CDX98843 | Canola | nucleus | 29.11 | 20.66 |
| CDX70151 | Canola | nucleus | 28.27 | 20.3 |
| CDY33814 | Canola | nucleus | 5.06 | 13.79 |
| CDX93190 | Canola | nucleus | 8.44 | 9.39 |
| CDY52924 | Canola | nucleus | 9.7 | 6.85 |
| CDX72012 | Canola | nucleus | 7.59 | 6.59 |
| CDY52095 | Canola | nucleus | 7.17 | 6.39 |
| CDY06088 | Canola | nucleus | 7.17 | 6.3 |
| CDX88955 | Canola | nucleus | 6.75 | 6.15 |
| TraesCS1D01G223600.2 | Wheat | nucleus | 10.13 | 6.14 |
| KXG21735 | Sorghum | nucleus | 8.44 | 5.95 |
| TraesCS1B01G235100.2 | Wheat | nucleus | 9.7 | 5.93 |
| CDY02629 | Canola | nucleus | 7.17 | 5.9 |
| CDY70626 | Canola | nucleus | 5.06 | 5.88 |
| CDX68128 | Canola | nucleus | 5.06 | 5.88 |
| CDY58117 | Canola | nucleus | 7.17 | 5.88 |
| Zm00001d010048_P004 | Maize | nucleus | 8.86 | 5.72 |
| CDY20377 | Canola | nucleus | 4.64 | 5.56 |
| CDY39036 | Canola | nucleus | 4.64 | 5.56 |
| TraesCS1A01G221900.1 | Wheat | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 9.28 | 5.41 |
| CDX70820 | Canola | nucleus | 6.33 | 5.36 |
| HORVU1Hr1G060490.5 | Barley | plasma membrane | 10.13 | 5.31 |
| CDY71905 | Canola | nucleus | 5.06 | 4.92 |
| CDX92610 | Canola | nucleus | 6.33 | 4.9 |
| CDY64211 | Canola | nucleus, plastid | 4.22 | 4.85 |
| CDY47519 | Canola | nucleus | 4.22 | 4.85 |
| CDY61527 | Canola | nucleus | 5.91 | 4.76 |
| CDY25420 | Canola | nucleus | 6.33 | 4.57 |
| CDY54455 | Canola | nucleus | 4.64 | 4.45 |
| HORVU6Hr1G050520.2 | Barley | nucleus | 3.8 | 3.8 |
| CDY52427 | Canola | nucleus | 5.06 | 3.72 |
| HORVU6Hr1G050500.2 | Barley | nucleus | 4.64 | 3.67 |
| CDY54991 | Canola | nucleus | 5.06 | 3.56 |
| CDY07614 | Canola | nucleus | 4.64 | 3.27 |
| CDY33815 | Canola | nucleus | 0.84 | 1.74 |
Protein Annotations
| EnsemblPlants:CDY00719 | EnsemblPlantsGene:GSBRNA2T00110566001 | ProteinID:CDY00719 | ProteinID:CDY00719.1 | SEG:seg | UniParc:UPI0004EE4424 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC03g37030D
Coordinates
chrLK031921:+:427479..429146
Molecular Weight (calculated)
26720.9 Da
IEP (calculated)
3.757
GRAVY (calculated)
-1.005
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSDESNSGV IKSQSREDGD CESRPVSQIV DVKERCGDGR VQETSVDEHR DVVNSRLSSY LLDEFELDYQ SRLTKELEEP KEEEEEEEVI QPEPELTVAD
101: YGWPNDMQSS VADYGWPSDM QNELGFWDQD DLFDVDELLG DLDVGLLTGL DPCQDQDQVQ PGGNDSHTLQ LEQHNDPCQN GEQVQPGGND SHPLQLEPHN
201: DPCQNQNHVH PGVNDSHPLA LEPHDGHEFF DLSFLDL
101: YGWPNDMQSS VADYGWPSDM QNELGFWDQD DLFDVDELLG DLDVGLLTGL DPCQDQDQVQ PGGNDSHTLQ LEQHNDPCQN GEQVQPGGND SHPLQLEPHN
201: DPCQNQNHVH PGVNDSHPLA LEPHDGHEFF DLSFLDL
001: MAVYEQTGTE QPKKRKSRAR AGGLTVADRL KKWKEYNEIV EASAVKEGEK PKRKVPAKGS KKGCMKGKGG PDNSHCSFRG VRQRIWGKWV AEIREPKIGT
101: RLWLGTFPTA EKAASAYDEA ATAMYGSLAR LNFPQSVGSE FTSTSSQSEV CTVENKAVVC GDVCVKHEDT DCESNPFSQI LDVREESCGT RPDSCTVGHQ
201: DMNSSLNYDL LLEFEQQYWG QVLQEKEKPK QEEEEIQQQQ QEQQQQQLQP DLLTVADYGW PWSNDIVNDQ TSWDPNECFD INELLGDLNE PGPHQSQDQN
301: HVNSGSYDLH PLHLEPHDGH EFNGLSSLDI
101: RLWLGTFPTA EKAASAYDEA ATAMYGSLAR LNFPQSVGSE FTSTSSQSEV CTVENKAVVC GDVCVKHEDT DCESNPFSQI LDVREESCGT RPDSCTVGHQ
201: DMNSSLNYDL LLEFEQQYWG QVLQEKEKPK QEEEEIQQQQ QEQQQQQLQP DLLTVADYGW PWSNDIVNDQ TSWDPNECFD INELLGDLNE PGPHQSQDQN
301: HVNSGSYDLH PLHLEPHDGH EFNGLSSLDI
Arabidopsis Description
DREB2BDehydration-responsive element-binding protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O82133]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.