Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014617.1-P | Field mustard | nucleus | 88.35 | 90.73 |
| CDX88955 | Canola | nucleus | 87.22 | 89.23 |
| Solyc10g080310.1.1 | Tomato | nucleus | 22.93 | 83.56 |
| CDY33815 | Canola | nucleus | 35.71 | 82.61 |
| CDY06088 | Canola | nucleus | 83.83 | 82.59 |
| CDX72012 | Canola | nucleus | 83.08 | 80.95 |
| CDY33814 | Canola | nucleus | 24.44 | 74.71 |
| AT3G57600.1 | Thale cress | nucleus | 77.44 | 74.37 |
| KRG95297 | Soybean | nucleus | 57.14 | 53.9 |
| Zm00001d043409_P001 | Maize | nucleus | 25.19 | 53.6 |
| KRH66977 | Soybean | nucleus | 55.26 | 51.76 |
| VIT_08s0007g08150.t01 | Wine grape | nucleus | 54.89 | 50.87 |
| KRG93713 | Soybean | nucleus | 51.88 | 50.55 |
| KRG93709 | Soybean | nucleus | 45.11 | 50.0 |
| KRH16554 | Soybean | nucleus | 48.5 | 49.81 |
| KRH71963 | Soybean | nucleus | 53.38 | 45.95 |
| KRH33104 | Soybean | nucleus | 53.01 | 44.2 |
| PGSC0003DMT400060970 | Potato | nucleus | 46.99 | 39.94 |
| KXG40072 | Sorghum | nucleus | 41.73 | 35.13 |
| Zm00001d048296_P001 | Maize | nucleus | 40.23 | 34.85 |
| GSMUA_Achr3P29800_001 | Banana | mitochondrion | 24.06 | 34.04 |
| Zm00001d027870_P001 | Maize | nucleus | 40.98 | 33.96 |
| Os03t0174400-00 | Rice | nucleus | 39.85 | 33.33 |
| TraesCS4B01G290100.1 | Wheat | nucleus | 38.72 | 32.7 |
| TraesCS4D01G289200.1 | Wheat | nucleus | 39.1 | 32.6 |
| TraesCS4A01G013600.1 | Wheat | nucleus | 39.1 | 32.5 |
| Zm00001d048297_P001 | Maize | nucleus | 38.72 | 31.99 |
| CDY39036 | Canola | nucleus | 22.93 | 30.81 |
| CDY20377 | Canola | nucleus | 22.18 | 29.8 |
| CDX68128 | Canola | nucleus | 22.18 | 28.92 |
| CDY70626 | Canola | nucleus | 21.8 | 28.43 |
| CDX93190 | Canola | nucleus | 22.56 | 28.17 |
| CDY64211 | Canola | nucleus, plastid | 21.43 | 27.67 |
| CDY47519 | Canola | nucleus | 21.43 | 27.67 |
| GSMUA_Achr7P27150_001 | Banana | nucleus | 25.94 | 26.54 |
| CDY71905 | Canola | nucleus | 23.31 | 25.41 |
| CDX70820 | Canola | nucleus | 24.81 | 23.57 |
| CDY58117 | Canola | nucleus | 25.56 | 23.53 |
| CDY54455 | Canola | nucleus | 21.8 | 23.48 |
| CDY02629 | Canola | nucleus | 25.19 | 23.26 |
| CDX92610 | Canola | nucleus | 25.56 | 22.22 |
| CDY36289 | Canola | nucleus | 24.06 | 21.99 |
| CDY67039 | Canola | nucleus | 23.68 | 21.58 |
| CDY25420 | Canola | nucleus | 25.56 | 20.73 |
| CDY04950 | Canola | nucleus | 25.19 | 20.68 |
| CDY52427 | Canola | nucleus | 24.81 | 20.43 |
| CDY61527 | Canola | nucleus | 22.56 | 20.41 |
| CDY00987 | Canola | nucleus | 23.68 | 20.26 |
| CDY52149 | Canola | nucleus | 24.81 | 20.12 |
| CDY08557 | Canola | nucleus | 23.68 | 20.06 |
| CDX98843 | Canola | nucleus | 25.19 | 20.06 |
| CDX70151 | Canola | nucleus | 24.44 | 19.7 |
| CDY07614 | Canola | nucleus | 24.06 | 19.05 |
| CDY52924 | Canola | nucleus | 24.06 | 19.05 |
| CDY54991 | Canola | nucleus | 23.31 | 18.4 |
| CDX73896 | Canola | nucleus | 24.81 | 17.28 |
| CDY00719 | Canola | nucleus | 6.39 | 7.17 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | GO:A0A078IM01 | UniProt:A0A078IM01 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDY52095 | ProteinID:CDY52095 | ProteinID:CDY52095.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00004900001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31241 | PANTHER:PTHR31241:SF3 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EE53CB | SEG:seg | : | : | : | : |
Description
BnaC04g55440DBnaC04g55440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IM01]
Coordinates
chrLK033056:-:36079..36879
Molecular Weight (calculated)
30393.9 Da
IEP (calculated)
7.048
GRAVY (calculated)
-0.789
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKPSSMKQW KKGPARGKGG PQNALCRYRG VRQRTWGKWV AEIREPKKRA RLWLGSFATA EEAAMAYDKA ALKLFDHEAY LNLPHLQRKQ GPPVNNTQRF
101: KWVPSKKFIS MFPSSRGLLN VNAQPSLHII QQRLDELKKN GLLSQSYFST SLLDEKTSKM LEGDDQKKPE MDLNEFLQQM GILKDKSKAE ASEVAECHYT
201: PPWSEQEKSG GPFTDQSLSW ESMIDEMPGS DTLVMHFDSN NFGSYDDFED DLGFPSIWNF CGSLDE
101: KWVPSKKFIS MFPSSRGLLN VNAQPSLHII QQRLDELKKN GLLSQSYFST SLLDEKTSKM LEGDDQKKPE MDLNEFLQQM GILKDKSKAE ASEVAECHYT
201: PPWSEQEKSG GPFTDQSLSW ESMIDEMPGS DTLVMHFDSN NFGSYDDFED DLGFPSIWNF CGSLDE
001: MEKSSSMKQW KKGPARGKGG PQNALCQYRG VRQRTWGKWV AEIREPKKRA RLWLGSFATA EEAAMAYDEA ALKLYGHDAY LNLPHLQRNT RPSLSNSQRF
101: KWVPSRKFIS MFPSCGMLNV NAQPSVHIIQ QRLEELKKTG LLSQSYSSSS SSTESKTNTS FLDEKTSKGE TDNMFEGGDQ KKPEIDLTEF LQQLGILKDE
201: NEAEPSEVAE CHSPPPWNEQ EETGSPFRTE NFSWDTLIEM PRSETTTMQF DSSNFGSYDF EDDVSFPSIW DYYGSLD
101: KWVPSRKFIS MFPSCGMLNV NAQPSVHIIQ QRLEELKKTG LLSQSYSSSS SSTESKTNTS FLDEKTSKGE TDNMFEGGDQ KKPEIDLTEF LQQLGILKDE
201: NEAEPSEVAE CHSPPPWNEQ EETGSPFRTE NFSWDTLIEM PRSETTTMQF DSSNFGSYDF EDDVSFPSIW DYYGSLD
Arabidopsis Description
DREB2FDehydration-responsive element-binding protein 2F [Source:UniProtKB/Swiss-Prot;Acc:Q9SVX5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.